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Report for CCDS50446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50446.1 Under review, update Mus musculus 19 Wnt8b 23 108 98 CCDS HistoryNCBI Gene:22423Re-query CCDS DB by CCDS ID:50446.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041163.4 ENSMUSP00000042867.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041163.4Link to Ensembl Protein Viewer:ENSMUSP00000042867.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041163Re-query CCDS DB by Protein ID:ENSMUSP00000042867
Original member NCBI NM_011720.3 NP_035850.2 Updated not alive Link to Nucleotide Sequence:NM_011720.3Link to Protein Sequence:NP_035850.2Re-query CCDS DB by Nucleotide ID:NM_011720Re-query CCDS DB by Protein ID:NP_035850
Current member NCBI NM_011720.4 NP_035850.3 Pending alive Link to Nucleotide Sequence:NM_011720.4Link to Protein Sequence:NP_035850.3Re-query CCDS DB by Nucleotide ID:NM_011720Re-query CCDS DB by Protein ID:NP_035850Link to BLAST:NP_035850.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035850.3 350 Q9WUD6 350 100% 0 0

Chromosomal Locations for CCDS 50446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44493550 44493668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44508798 44508831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44509542 44509680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44510424 44510549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44511232 44511374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44511537 44512082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGCTTCCCATCTCTCAATGTTTGAGTCGCTCACCCTGCCTTTCTCCGAAGACCATGTTTCTTATGAAGC
CCGTGTGCGTTCTTCTAGTCACTTGTGTCCTTCACCGCAGCCACGCCTGGTCAGTGAACAATTTTCTGAT
GACCGGTCCAAAGGCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAA
TGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTG
GACTTCGAAGCGCTAACCGGGAGACAGCATTTGTGCACGCCATCAGCTCTGCTGGGGTTATGTACACCCT
GACTAGAAACTGCAGCCTCGGAGACTTTGACAACTGTGGCTGTGATGACTCCCGAAATGGACAACTGGGG
GGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTG
TGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAA
GGCGGTCAAGGGCACCATGAAACGCACGTGTAAGTGCCACGGTGTGTCCGGCAGCTGCACCACGCAGACC
TGCTGGTTGCAACTGCCAGAGTTCCGGGAGGTAGGCGCGCACTTGAAGGAGAAGTATCATGCGGCGCTCA
AGGTGGACCTGCTGCAAGGCGCGGGCAACAGCGCGGCGGGCCGCGGAGCCATCGCCGACACCTTCCGCTC
CATCTCCACCCGCGAGCTGGTGCATCTGGAGGACTCCCCAGACTACTGCCTGGAGAACAAGACCCTGGGG
CTGCTGGGCACCGAGGGCCGAGAGTGTCTGCGGCGCGGGCGCGCCCTGGGTCGCTGGGAGCGCCGCAGTT
GTCGCCGGCTGTGCGGGGACTGCGGGCTAGCGGTGGAGGAGCGCCGCGCCGAGACAGTGTCCAGCTGCAA
CTGCAAGTTTCACTGGTGCTGCGCGGTCCGCTGCGAGCAGTGCCGCCGGCGGGTCACCAAGTACTTCTGC
AGCCGCGCAGAGCGGCCGCCCAGAGGCGCTGCGCACAAACCGGGAAAGAACTCCTAA

Translation (368 aa):
MLPISQCLSRSPCLSPKTMFLMKPVCVLLVTCVLHRSHAWSVNNFLMTGPKAYLVYSSSVAAGAQSGIEE
CKYQFAWDRWNCPERALQLSSHGGLRSANRETAFVHAISSAGVMYTLTRNCSLGDFDNCGCDDSRNGQLG
GQGWLWGGCSDNVGFGEAISKQFVDALETGQDARAAMNLHNNEAGRKAVKGTMKRTCKCHGVSGSCTTQT
CWLQLPEFREVGAHLKEKYHAALKVDLLQGAGNSAAGRGAIADTFRSISTRELVHLEDSPDYCLENKTLG
LLGTEGRECLRRGRALGRWERRSCRRLCGDCGLAVEERRAETVSSCNCKFHWCCAVRCEQCRRRVTKYFC
SRAERPPRGAAHKPGKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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