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Report for CCDS29842.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29842.2 Public Mus musculus 19 Erlin1 23 108 98 CCDS HistoryNCBI Gene:226144Re-query CCDS DB by CCDS ID:29842.2See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 29842.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29842.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071698.12 ENSMUSP00000071618.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071698.12Link to Ensembl Protein Viewer:ENSMUSP00000071618.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071698Re-query CCDS DB by Protein ID:ENSMUSP00000071618
Original member Current member EBI ENSMUST00000112028.9 ENSMUSP00000107659.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112028.9Link to Ensembl Protein Viewer:ENSMUSP00000107659.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112028Re-query CCDS DB by Protein ID:ENSMUSP00000107659
Original member Current member EBI ENSMUST00000170801.7 ENSMUSP00000129684.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170801.7Link to Ensembl Protein Viewer:ENSMUSP00000129684.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170801Re-query CCDS DB by Protein ID:ENSMUSP00000129684
Original member Current member NCBI NM_001164359.1 NP_001157831.1 Accepted alive Link to Nucleotide Sequence:NM_001164359.1Link to Protein Sequence:NP_001157831.1Re-query CCDS DB by Nucleotide ID:NM_001164359Re-query CCDS DB by Protein ID:NP_001157831Link to BLAST:NP_001157831.1
Original member Current member NCBI NM_001164360.1 NP_001157832.1 Accepted alive Link to Nucleotide Sequence:NM_001164360.1Link to Protein Sequence:NP_001157832.1Re-query CCDS DB by Nucleotide ID:NM_001164360Re-query CCDS DB by Protein ID:NP_001157832Link to BLAST:NP_001157832.1
Original member Current member NCBI NM_145502.3 NP_663477.3 Accepted alive Link to Nucleotide Sequence:NM_145502.3Link to Protein Sequence:NP_663477.3Re-query CCDS DB by Nucleotide ID:NM_145502Re-query CCDS DB by Protein ID:NP_663477Link to BLAST:NP_663477.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157831.1 348 Q91X78 348 100% 0 0
NP_001157832.1 348 Q91X78 348 100% 0 0
NP_663477.3 348 Q91X78 348 100% 0 0

Chromosomal Locations for CCDS 29842.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44036927 44037148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44039173 44039252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44040747 44040836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44047635 44047726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44049122 44049180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44056122 44056195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44059051 44059176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44061843 44061904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44063019 44063065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44067600 44067681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44069272 44069384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGAATATGACTCAAGCCCGGCTTCTGGTGGCTGCAGTGGTGGGGTTGGTGGCGATCCTCCTGTACGCCT
CCATCCACAAGATCGAAGAGGGACACTTGGCCGTGTACTACAGGGGAGGAGCTTTGCTAACGAGCCCCAG
TGGACCAGGCTATCATATCATGTTGCCTTTCATTACAACATTCAGATCTGTGCAGACAACACTACAAACG
GATGAAGTTAAAAATGTGCCTTGTGGAACAAGTGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGG
TTAATATGTTGGCTCCTTATGCAGTGTTTGACATTGTGAGGAACTATACTGCAGACTACGACAAGACTTT
AATCTTCAATAAAATCCACCATGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATA
GAATTGTTTGATCAAATAGATGAAAACCTGAAGCAGGCCCTGCAAAAAGATTTAAACACCATGGCCCCAG
GTCTCACTATCCAGGCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATT
AATGGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAG
ACGGAGAGGAAAAGGGCTGTTATAGAAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGA
AAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAGATGCTGCGTTCCTGGCCCGAGAGAA
GGCAAAAGCAGATGCCGAGTATTACGCTGCACACAAATACGCCACCTCAAACAAGCACAAACTGACCCCA
GAGTATCTGGAGCTCAAGAAATACCAGGCCATTGCCTCAAACAGTAAGATCTACTTTGGCAGCAACATCC
CCAGCATGTTTGTGGACTCCTCCTGTGCTCTGAAATACTCTGATGGTAGGACTGGGAGAGAAGACTCCCT
TCCCCCAGAGGAGGCCCGTGAGCCCTCTGGAGAGAGCCCCATCCAAAACAAGGAGAACGCAGGTTGA

Translation (348 aa):
MNMTQARLLVAAVVGLVAILLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQT
DEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYI
ELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAE
TERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTP
EYLELKKYQAIASNSKIYFGSNIPSMFVDSSCALKYSDGRTGREDSLPPEEAREPSGESPIQNKENAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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