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Report for CCDS25837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25837.1 Public Mus musculus 12 Ywhaq 23 108 98 CCDS HistoryNCBI Gene:22630Re-query CCDS DB by CCDS ID:25837.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103002.7 ENSMUSP00000100067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103002.7Link to Ensembl Protein Viewer:ENSMUSP00000100067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103002Re-query CCDS DB by Protein ID:ENSMUSP00000100067
Original member Current member EBI ENSMUST00000135088.8 ENSMUSP00000123605.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135088.8Link to Ensembl Protein Viewer:ENSMUSP00000123605.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135088Re-query CCDS DB by Protein ID:ENSMUSP00000123605
Original member Current member NCBI NM_011739.3 NP_035869.1 Accepted alive Link to Nucleotide Sequence:NM_011739.3Link to Protein Sequence:NP_035869.1Re-query CCDS DB by Nucleotide ID:NM_011739Re-query CCDS DB by Protein ID:NP_035869Link to BLAST:NP_035869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035869.1 245 P68254-1 245 100% 0 0

Chromosomal Locations for CCDS 25837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 21391356 21391415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21394965 21395060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21396282 21396445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21398241 21398364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 21416798 21417091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGAGAAGACCGAGCTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCA
CCTGCATGAAAGCCGTGACGGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTGTCGGTGGC
CTACAAAAACGTGGTAGGGGGCCGCAGGTCCGCCTGGAGGGTCATCTCGAGCATTGAGCAGAAGACCGAC
ACCTCTGACAAGAAGTTGCAGCTGATCAAGGACTATCGGGAGAAAGTGGAGTCGGAGCTGAGGTCCATCT
GCACCACGGTCCTGGAATTGTTGGATAAGTATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTT
CTATCTGAAAATGAAGGGAGATTATTTCCGGTATCTTGCTGAAGTAGCTTGTGGCGATGATCGAAAACAA
ACAATAGAAAATTCCCAAGGAGCCTACCAAGAGGCGTTTGATATAAGCAAGAAGGAGATGCAGCCTACGC
ATCCAATCCGCCTGGGGCTGGCTCTTAACTTTTCTGTATTTTACTATGAGATCCTTAATAATCCAGAGCT
TGCCTGCACACTGGCTAAAACGGCTTTTGATGAGGCCATCGCAGAGCTTGATACACTGAACGAAGACTCC
TACAAAGACAGCACCCTCATCATGCAGTTGCTTAGAGACAACTTAACATTATGGACATCAGACAGTGCAG
GAGAAGAATGTGATGCAGCAGAGGGGGCCGAAAACTAA

Translation (245 aa):
MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTD
TSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQ
TIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKTAFDEAIAELDTLNEDS
YKDSTLIMQLLRDNLTLWTSDSAGEECDAAEGAEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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