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Report for CCDS14948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14948.1 Public Mus musculus 1 Hibch 23 108 98 CCDS HistoryNCBI Gene:227095Re-query CCDS DB by CCDS ID:14948.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044478.6 ENSMUSP00000045606.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044478.6Link to Ensembl Protein Viewer:ENSMUSP00000045606.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044478Re-query CCDS DB by Protein ID:ENSMUSP00000045606
Original member Current member NCBI NM_146108.2 NP_666220.1 Accepted alive Link to Nucleotide Sequence:NM_146108.2Link to Protein Sequence:NP_666220.1Re-query CCDS DB by Nucleotide ID:NM_146108Re-query CCDS DB by Protein ID:NP_666220Link to BLAST:NP_666220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666220.1 385 Q8QZS1 385 100% 0 0

Chromosomal Locations for CCDS 14948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52845110 52845144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52853668 52853710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52860028 52860165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52862268 52862352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52865549 52865629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52868906 52868958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52885103 52885181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52901188 52901333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52902847 52902933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52904642 52904700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52905371 52905452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52913731 52913850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52916637 52916670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52920263 52920378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGGGCAGCCATATGCGTGGCGGCTCCTGTCGAGGGTCAGCTCCTTCAGAAGAGCCAGCGTTATTCTGC
AACATCTGAGAATGTCCATGCACACAGAAGCTGCAGAAGTGCTGCTGGAGAGGAGAGGCTGTGGAGGCGT
CATAACGCTCAACAGACCCAAGTTCCTCAACGCACTGAGTCTGAATATGATCCGGCAGATCTATCCACAG
CTAAAGACATGGGAACAAGACCCTGACACATTCCTGATCATCATAAAGGGAGCCGGAGGAAAGGCCTTCT
GTGCTGGAGGGGACATCAAAGCACTCTCAGAAGCTAAAAAAGCAAGACAGAATTTAACTCAAGATTTATT
CAGAGAAGAATACATCTTGAACAATGCAATTGCATCTTGTCAGAAACCATATGTTGCCCTTATTGATGGA
ATCACAATGGGTGGGGGAGTTGGTCTTTCAGTCCATGGTCAATTCCGAGTGGCTACAGAAAGGTCTCTCT
TTGCTATGCCAGAAACGGGAATAGGACTATTTCCTGATGTGGGTGGAGGTTATTTCTTGCCAAGACTTCA
AGGAAAACTCGGTTACTTCCTTGCACTGACAGGATACAGACTAAAGGGAAGAGATGTGCACAGAGCGGGA
ATTGCCACACACTTTGTAGATTCGGAAAAGTTGCGTGTGTTGGAGGAGGAGCTGTTAGCCTTAAAGTCAC
CTTCAGCTGAGGATGTTGCAGGTGTCTTAGAAAGCTATCATGCCAAGTCCAAGATGGATCAAGACAAATC
TATCATATTTGAGGAACACATGGACAAAATAAACAGTTGTTTTTCAGCCAATACCGTGGAACAGATAATT
GAAAACTTACGGCAAGATGGGTCACCTTTTGCCATAGAACAGATGAAGGTAATTAATAAAATGTCTCCGA
CATCACTAAAGATCACACTAAGGCAACTCATGGAGGGCTCTTCAAAGACTTTGCAAGAGGTACTGATCAT
GGAATATCGGATAACTCAAGCATGTATGGAAGGGCATGACTTTCATGAAGGTGTTAGAGCTGTTCTCATT
GACAAAGACCAGACTCCAAAATGGAAACCAGCCAATCTAAAAGATGTTACGGATGAAGACTTGAATAGTT
ACTTTAAATCTCTGGGAAGCAGTGATTTGAAATTCTAA

Translation (385 aa):
MGQPYAWRLLSRVSSFRRASVILQHLRMSMHTEAAEVLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQ
LKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDG
ITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAG
IATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQII
ENLRQDGSPFAIEQMKVINKMSPTSLKITLRQLMEGSSKTLQEVLIMEYRITQACMEGHDFHEGVRAVLI
DKDQTPKWKPANLKDVTDEDLNSYFKSLGSSDLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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