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Report for CCDS17772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17772.1 Public Mus musculus 3 Slc25a24 23 108 98 CCDS HistoryNCBI Gene:229731Re-query CCDS DB by CCDS ID:17772.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029477.10 ENSMUSP00000029477.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029477.10Link to Ensembl Protein Viewer:ENSMUSP00000029477.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029477Re-query CCDS DB by Protein ID:ENSMUSP00000029477
Original member Current member NCBI NM_172685.3 NP_766273.1 Accepted alive Link to Nucleotide Sequence:NM_172685.3Link to Protein Sequence:NP_766273.1Re-query CCDS DB by Nucleotide ID:NM_172685Re-query CCDS DB by Protein ID:NP_766273Link to BLAST:NP_766273.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766273.1 475 Q8BMD8 475 100% 0 0

Chromosomal Locations for CCDS 17772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109123205 109123387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109136212 109136338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109149483 109149570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109154994 109155105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109156847 109157005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109158498 109158644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109159348 109159455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109161217 109161384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109163419 109163569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109166326 109166510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGCTGCGCTGGCTGCGGGCCTTTGTGCTGCCCACCGCCGCCTGCCACGACGCGGAGCCGCCCACACGCT
AC
GAAACGCTCTTCCGGGCGCTGGACCGCAATGGGGACGGCGTGGTGGACATCGGAGAGCTGCAGCAGGG
G
CTGCAAAGCCTGGGCATCCCGCTGGGCCAGGACGCGGAGGAGAAAATTTTCACCACTGGCGATGTCAAC
AAA
GATGGGAAGCTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAG
CA
TTTAAAAGTTTGGACAAGAATAATGACGGGAAAATCGAGCCTTCTGAAATTGTCCAGTCTCTCCAGAT
G
CTCGGTTTACATATTTCTGAAAAGCAAGCAGAGCTGATTCTTCAAAGCATCGACTCTGATGGGACGATG
ACC
GTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCC
GT
TTCTGGAAACACTCTACTGGAATTGACATAGGGGATAGTTTAACTATTCCAGATGAATTCACAGAAGA
T
GAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCGGGCGCCGTCTCTAGAACG
AGC
ACCGCTCCTTTGGATCGCCTCAAGGTCATGATGCAGGTTCATGGTTCCAAATCAATGAATATATTTG
GA
GGCTTTCGGCAGATGGTAAAGGAAGGAGGAATCCGTTCCCTTTGGAGAGGAAATGGCACCAATGTCAT
C
AAAATAGCTCCCGAGACAGCTGTGAAGTTCTGGGCTTATGAACAGTACAAGAAGTTGCTTACCGAGGAA
GGA
CAAAAATTAGGGACCTTTGAGAGGTTTATCTCTGGTTCCATGGCTGGAGCAACTGCTCAGACTTTTA
TT
TACCCCATGGAGGTTTTGAAAACCCGGCTAGCTGTAGCCAAAACTGGACAATACTCCGGAATATACGG
T
TGTGCCAAGAAGATTTTGAAACACGAAGGCTTTGGGGCTTTTTACAAAGGCTACATTCCCAATTTACTA
GGC
ATCATTCCTTACGCAGGCATTGATCTCGCTGTGTACGAGCTTTTGAAGTCTTATTGGCTGGATAACT
TT
GCCAAAGACTCGGTCAACCCTGGCGTGATGGTGCTGCTGAGCTGTGGAGCCCTATCCAGCACCTGTGG
G
CAGCTGGCCAGCTACCCCCTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAGCCACGGTAGAAGGAGCC
CCG
CAGCTGAGCATGGTTGGCCTTTTTCAGCGAATCGTCTCCAAAGAAGGAGTGTCAGGACTTTACAGAG
GC
ATCACCCCAAACTTCATGAAAGTGCTCCCGGCCGTGGGCATCAGCTATGTGGTGTATGAAAATATGAA
G
CAGACCCTGGGAGTAGCTCAGAAGTGA


Translation (475 aa):
MLRWLRAFVLPTAACHDAEPPTRYETLFRALDRNGDGVVDIGELQQGLQSLGIPLGQDAEEKIFTTGDVN
K
DGKLDFEEFMKYLKDHEKKMKLAFKSLDKNND
GKIEPSEIVQSLQMLGLHISEKQAELILQSIDSDGTM
T
VDWNEWRDYFLFNPVTDIEEIIRFWKHST
GIDIGDSLTIPDEFTEDEKKSGQWWRQLLAGGVAGAVSRT
S
TAPLDRLKVMMQ
VHGSKSMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEE
G
QKLGTFERFISGSMAGATAQTFIYPME
VLKTRLAVAKTGQYSGIYGCAKKILKHEGFGAFYKGYIPNLL
G
IIPYAGIDLAVYE
LLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRMQAQATVEGA
P
QLSMVGLFQRIVSKEGVSGLYRGITPNFMKVLPAVGISYVVYENMKQTLGVAQK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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