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Report for CCDS18814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18814.1 Public Mus musculus 4 Zbtb40 23 108 98 CCDS HistoryNCBI Gene:230848Re-query CCDS DB by CCDS ID:18814.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049583.7 ENSMUSP00000061899.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049583.7Link to Ensembl Protein Viewer:ENSMUSP00000061899.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049583Re-query CCDS DB by Protein ID:ENSMUSP00000061899
Original member Current member NCBI NM_198248.1 NP_937891.1 Accepted alive Link to Nucleotide Sequence:NM_198248.1Link to Protein Sequence:NP_937891.1Re-query CCDS DB by Nucleotide ID:NM_198248Re-query CCDS DB by Protein ID:NP_937891Link to BLAST:NP_937891.1

Chromosomal Locations for CCDS 18814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136983050 136983244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136984814 136985040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136986483 136986569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136987209 136987371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136988548 136988765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136991498 136991662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136994345 136994551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136995251 136995712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136996025 136996193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136997821 136997954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136998497 136998698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136999476 136999612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137000894 137000974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137001201 137001393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137007038 137007180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137007735 137007897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137017277 137017410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137018024 137018720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3777 nt):
ATGGAACTCCCCAGCTACAGCCAGCAGCTGCTTCTGCAGCTCTACGCCCTGTGCAAGGAGCAGCGGTTCT
GTGATTGCACCATTTCCGTCGGCAACATCTACTTCAGGGCCCACAAGCCAGTCCTGGCAGCAGCCAGCCT
CCTGTTCAAAACCCTGCTGGACAGCACAGACGCCATCTCCATCGATGCATCCGTGGTGAGCCCCGAAGAG
TTTGCCCTCTTGCTAGAAATGACATACACCGGTAAGCTACCTGTGGGCAAGCACAACTTCTCCAAGATCA
TCTCCTTAGCAGATAGCCTGCAGATGTTTGACGTGGCCGTTAGTTGTAAAAACCTTCTGACCAACCTGGT
AAACTGCTCTGTCCAGGGGCAGGTGGTAAGAGATGTCTCAGTGCTGTCCTCAGAGGCAGGGAACAAGGAG
TCAGAGAAGCCACAAGTAGAAGCCCTCTCCTCTGAAGGTGCTGAGGAGCCCTCTTCTTCCCCGGAAGTTT
CTGCCGTGCCAGCGGGCCCTGAGAAAGCCAAGACCCAGGACGTAATCAACATAGCTACCCAAGAGATAAA
TGCAGACCCTCCCGTTGCCCAAGAGGTTCAGGTGGCTGCAGAGATCACAGGGGCGACTCCTCACACAGCT
GAAGTTTGTTCCCCTTCCCCTGTTGGACAAATCCCAAGTGAGACGAAAGAAGTCAATACAGAAGCAGAGT
GCGAGACAAAGCAGGACCAACTGACTCTCCTGCTAGAGCATGAAAGCGTCTTCTCAGATGCAGCCTTGCT
CACCCCAGACACCCTGAGAAGACTGGCAGGATGCTCAGAGATTGAAGGGCCTCAGAAGGAGACCATAATA
GAATGTCTCACGAGTGAAGGAGGCAGTTCAGCGTTCCAGAGAATTCTGGACAAAGTGCACGATGGGAGCC
TGGATGTGCAGGTGGCTCTGTCTCTGGTGAGACTATACCAGGAGTCTACACCTGCAGAGAAAGTGTCTCA
GATTCAACCAGAAGGGAGCGCAGGAGAGGGAAAGACCTTGTCTGTTCTGCTACTGGAACACAAAGAGGAC
CTGATCCAGTGTGTAACACAGCTCAGACCTATTGTGGAGTTCCTGGAAACAGCCAAGGAGGAATTCCTGC
CAGATTCCGAAAAAAGGGTGATTCAGAGCTGCTGTGAGGGCAGAACACCCAAGGAGATGATAGAGAATTT
GTTGCACAGAGTGACTGAAGAGAAGACCCTGCCTGCCAAGAGTCTGGTAAAACTCCTCCAGGCTGTGAGG
ACAGCATTCCCAAACCTGGACCTCCTGCTGGACAATTTGCAGAAAGGAGCGGGATCAGCCGGCACCACAG
GCCTGGCCAGAGTCTCCTGTGAATCAGAATGGACAGATGAGCCCAGGCCAGTGTGCATTCCAGCAGACCG
CGTGGATGGATCCTCCCCTAGCCCTGATGCTTACGGAGCTGAGCTGTTGAGAAAGTACCATGAGAACCTG
TCTGAGATTCTCATAGACAACCAGGTGCTGCTGAAGGTGATCTCACGGATGCAAAGCTTAGCCCCTGGAG
ACAGAGAGGTCATGCAGACCCTCGTGAAACAGGGCTCTGGCTCGGGTGGCTTCAGTTCCCTGATGTTGGC
AGCTCTGGAAAGGCAGACTCTCTCAGCAACGGCCATTTGGCAACTACTGCTAGCAGTTGAAGAGACTGAG
ACCCGCCCACTGAACCTGCTCTTGGAGGAAGTAGGAAAGGAGCCCGGCGCTGGGGCTTTCTTCCGGGCAG
TGACTGCCCCAGAGAGCACAGTATTGGAAGCCATCCTGAGGCACAGCAAGCTGCTCCGGGAAGCCATCCA
GCAGACAGCGGGGTGTGAGCGCCTTTCTTCAGAGGAAGAACACCTGGCAGAGACCGTGCAAGAGATGCTG
AGCATATCCTCCGAGACAGTGAGCCCTGAAGCCTCCCTGAGAGCGGTGCTGAGCAAAGCCATGGAGAAAT
CTGTCTCGGCCTCTGTGGTCTGTCACCTCCTCTGCAGTGTCCACAAGTCTTTCCCTGGCCTGCAGCCCCT
GATGCAGGAGTTGGCACATGTTGGTTTCCTTACCAAGGAAAGCGGAGAGGAGAGGTGGAAGGTGACTGAT
GGCCTTCACCCTGGAGCCAAGGACAAAGTGGAGGAAGTGGCCAAGGCAACCGGAGAAGACTGCCAGGCCA
ATGAACAAAAGGAGCAGGGAGAGCCTGGGCCCGTGCCAGAGCAACCGGAGAAAGACACTTCTGCCTCCCC
AGACTCTGCCAAGAAGAGCTTCGTCTGCAAAGCCTGTGATAAGAGCTTCCATTTCTACTGCCGTCTGAAG
GTGCACATGAAGCGCTGCCGGGTGGCCAAGAGCAGGCAGGTGCAGAGCGAGGAGGGCAGCGAGACCAAGG
GCTCGGAGAAGGGGCTGGAGAAGCAGCAGCCGGACGCCCGCGGCACAGGTGGGGAGCCCGATGCCCCCAA
GAAGAAGAAGAAGCGGCTGCCAGTGACATGTGACCTCTGCGGAAGAGAGTTTGCCCATGCCTCAGGCATG
CAGTACCACAAGCTGACCGAGCACTTCGACGAGAAACCTTTCTCCTGTGAGGAATGTGGGGCGAAGTTTG
CAGCCAACTCTACCCTGAAGAACCACCTGCGCCTGCACACCGGAGACCGCCCGTTCATGTGCAAGCATTG
CCTCATGACCTTCACGCAGGCCTCCGCCCTGGCTTACCACACCAAGAAGAAGCACTCGGAAGGGAAAATG
TACGCGTGCCAGTACTGTGACGCCGTGTTCGCCCAGTCGATCGAGCTATCCCGGCATGTGAGGACCCACA
CCGGGGACAAGCCATATGTCTGTAGGGACTGTGGAAAGGGCTTCCGGCAAGCCAACGGCCTCTCCATCCA
CCTGCACACCTTCCACACAGACATAGAAGACCCTTATGACTGCAAGAAATGCAGGATGAGCTTCTCCACA
CTGCAGGACCACCGGAAGCACATCCACGAGGTGCACGCCAAGGAGTACCACCCCTGCCCCACGTGCGGCA
AGATCTTCAGTGCCCCTTCCATGCTGGAGCGGCACATGGTGACCCACGTGGGAGGGAAGCCCTTCAGCTG
TGGGATCTGCAACAAGGCCTACCAGCAATTGTCTGGATTGTGGTACCACAATCGGACGCACCACCCAGAT
GTGTTTGCTGCTCAGAACCATCGGTCACCCAAGTTCTCATCACTGCAGTGTAGCTCCTGTGACAAGACCT
TTTCCAATACTGTCGAACACAAGAAGCACATCAAAACAGAACACACAGATGTGAAGTTCCATGAGTGTGA
CCAGTGCAAGGAGCTCTTCCCCACACCTGCTCTGCTCCAGGTTCACGTCAAGTGCCAGCATTCAGGGTCG
CAGCCATTCCGGTGCTTGTACTGTGCAGCCACCTTCCGCTTCCCGGGAGCCCTGCAGCACCACGTCACCA
CAGAGCACTTTAAGCAGTCGGAAAGCACCTTCCCCTGCGAGCTCTGTGGCGAGCTCTTCACCTCCCAGGC
CCAGCTTGATAGCCACTTGGAGTCTGAGCACCCAAAGGTGGCAGGCACTGAGTCCCAGGCAGCTGCCTCT
CGCATGGTGCAGGTGATCCGAGCTCCGGAGCCAGCGGCCCCGGCCGAGCAGGTGATCACGTTGGAGGAGA
CGCAGCTCGCTGGCTCGCAGGTGTTTGTGACCTTGCCAGATTCACAGACCTCTCAGAACAGCTCCGAGCT
TGTGGCAGTGACGGTGGAGGATTTGCTGGATGGTACTGTCACATTGATCTGTGGTGAGGCCAAGTGA

Translation (1258 aa):
MELPSYSQQLLLQLYALCKEQRFCDCTISVGNIYFRAHKPVLAAASLLFKTLLDSTDAISIDASVVSPEE
FALLLEMTYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTNLVNCSVQGQVVRDVSVLSSEAGNKE
SEKPQVEALSSEGAEEPSSSPEVSAVPAGPEKAKTQDVINIATQEINADPPVAQEVQVAAEITGATPHTA
EVCSPSPVGQIPSETKEVNTEAECETKQDQLTLLLEHESVFSDAALLTPDTLRRLAGCSEIEGPQKETII
ECLTSEGGSSAFQRILDKVHDGSLDVQVALSLVRLYQESTPAEKVSQIQPEGSAGEGKTLSVLLLEHKED
LIQCVTQLRPIVEFLETAKEEFLPDSEKRVIQSCCEGRTPKEMIENLLHRVTEEKTLPAKSLVKLLQAVR
TAFPNLDLLLDNLQKGAGSAGTTGLARVSCESEWTDEPRPVCIPADRVDGSSPSPDAYGAELLRKYHENL
SEILIDNQVLLKVISRMQSLAPGDREVMQTLVKQGSGSGGFSSLMLAALERQTLSATAIWQLLLAVEETE
TRPLNLLLEEVGKEPGAGAFFRAVTAPESTVLEAILRHSKLLREAIQQTAGCERLSSEEEHLAETVQEML
SISSETVSPEASLRAVLSKAMEKSVSASVVCHLLCSVHKSFPGLQPLMQELAHVGFLTKESGEERWKVTD
GLHPGAKDKVEEVAKATGEDCQANEQKEQGEPGPVPEQPEKDTSASPDSAKKSFVCKACDKSFHFYCRLK
VHMKRCRVAKSRQVQSEEGSETKGSEKGLEKQQPDARGTGGEPDAPKKKKKRLPVTCDLCGREFAHASGM
QYHKLTEHFDEKPFSCEECGAKFAANSTLKNHLRLHTGDRPFMCKHCLMTFTQASALAYHTKKKHSEGKM
YACQYCDAVFAQSIELSRHVRTHTGDKPYVCRDCGKGFRQANGLSIHLHTFHTDIEDPYDCKKCRMSFST
LQDHRKHIHEVHAKEYHPCPTCGKIFSAPSMLERHMVTHVGGKPFSCGICNKAYQQLSGLWYHNRTHHPD
VFAAQNHRSPKFSSLQCSSCDKTFSNTVEHKKHIKTEHTDVKFHECDQCKELFPTPALLQVHVKCQHSGS
QPFRCLYCAATFRFPGALQHHVTTEHFKQSESTFPCELCGELFTSQAQLDSHLESEHPKVAGTESQAAAS
RMVQVIRAPEPAAPAEQVITLEETQLAGSQVFVTLPDSQTSQNSSELVAVTVEDLLDGTVTLICGEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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