NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19846.1 Public Mus musculus 5 Ccz1 23 108 98 CCDS HistoryNCBI Gene:231874Re-query CCDS DB by CCDS ID:19846.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031621.10 ENSMUSP00000031621.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031621.10Link to Ensembl Protein Viewer:ENSMUSP00000031621.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031621Re-query CCDS DB by Protein ID:ENSMUSP00000031621
Original member NCBI NM_177682.3 NP_808350.1 Updated not alive Link to Nucleotide Sequence:NM_177682.3Link to Protein Sequence:NP_808350.1Re-query CCDS DB by Nucleotide ID:NM_177682Re-query CCDS DB by Protein ID:NP_808350
Current member NCBI NM_177682.4 NP_808350.1 Accepted alive Link to Nucleotide Sequence:NM_177682.4Link to Protein Sequence:NP_808350.1Re-query CCDS DB by Nucleotide ID:NM_177682Re-query CCDS DB by Protein ID:NP_808350Link to BLAST:NP_808350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808350.1 480 Q8C1Y8 480 100% 0 0

Chromosomal Locations for CCDS 19846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143988194 143988249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143990638 143990765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143991472 143991630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143992509 143992626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143993226 143993259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143998163 143998274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143998544 143998605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144001377 144001458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144004043 144004218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144009203 144009286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144011031 144011078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144011452 144011529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144012803 144012896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144012994 144013091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144014699 144014812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCGGCAGCCGCGGCCGGGCCGGGTGCTTGGGCGGCCCAGGAGAAGCAGTTCCCGCCAGCGCTGCTGA
GCTTCTTCATCTACAACCCCCGTTTCGGGCCGCGCGAGGGAGAGGAAGAAAATAAAATTCTGTTTTACCA
TCCAAATGAAGTAGAAAAGAATGAAAAAATTAGAAATGTTGGATTATGTGAAGCAATTGTACAGTTTACA
AGGACTTTTAGCCCATCGAAACCTGCAAAATCTTTACACACACAGAAGAACAGACAGTTCTTCAATGAAC
CAGAAGAAAATTTCTGGATGGTTATGGTTGTTCGGAATCCTATCATCGAGAAGCAAAGTAAAGATGGCAA
GGCGGTAGTGGAGTACCAAGAGGAGGAGCTGTTGGACAAGGTGTACAGCTCAGTGCTGCAGCAGTGCTAC
AGCATGTACAAGCTTTTCAATGGGACGTTTCTGAAAGCCATGGAAGATGGAGGCGTCAAGCTCCTAAAGG
AAAGATTAGAGAAATTCTTCCATCGGTATTTGCAGACACTACATTTGCAGTCATGTGACCTACTTGATAT
TTTTGGTGGAATCAGCTTCTTCCCATTGGATAAAATGACTTACTTGAAAATCCAGTCCTTTATTAACCGA
ATGGAAGAAAGCCTAAGTGTAGTCAAATATACAGCATTCCTCTACAATGACCAACTTATCTGGAGTGGAC
TAGAGCAAGATGACATGAGAATTTTGTACAAATACCTCACCACCTCACTGTTCCCCAGGCACATCGAACC
TGAGTTGGCGGGAAGGGACTCCCCAGTCAGGGCAGAGATGCCTGGGAATCTTCAGCACTATGGAAGATTT
CTTACTGGACCCTTGAACCTTAATGATCCAGAAGCAAAATGCAGATTCCCCAAAATTTTTGTAAATACAG
ATGACACGTATGAAGAGCTCCATTTAATTGTTTATAAGGCCATGAGTGCAGCCGTGTGCTTCATGATTGA
CGCCTCCACGCCGCTCACGCTGGATTTCTGCCGAAGACTGGACAGCATCGTTGGGCCCCAGCTTACGGTG
CTGGCATCTGACATCTGTGAGCAGTTTAATATCAACAAGAGGATCTCTGGGTCTGAAAAGGAGCCCCAGT
TTAAGTTCATCTACTTCAACCACATGAATTTAGCAGAGAAAAGTACAATTCACATGAGGAAAACGCCCAG
TGTGTCACTCACATCCGTCCACCCAGATCTAATGAAGATATTAGGGGACATCAACAGTGACTTTACCAGA
GCAGATGAAGATGAAGAAATCATTGTGAAGGCCATGAGCGACTACTGGGTTGTTGGGAAGAAGTCTGACC
AGCGGGAGCTGTACGTGATTCTCAGTCAGAAGAATGCGAACCTGATCGAGGTCAATGAAGAGGTGAAGAA
ACTGTGTGCCACGCAGTTCAACAACATCTTCTTCTTGGATTGA

Translation (480 aa):
MAAAAAGPGAWAAQEKQFPPALLSFFIYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFT
RTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYSSVLQQCY
SMYKLFNGTFLKAMEDGGVKLLKERLEKFFHRYLQTLHLQSCDLLDIFGGISFFPLDKMTYLKIQSFINR
MEESLSVVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFPRHIEPELAGRDSPVRAEMPGNLQHYGRF
LTGPLNLNDPEAKCRFPKIFVNTDDTYEELHLIVYKAMSAAVCFMIDASTPLTLDFCRRLDSIVGPQLTV
LASDICEQFNINKRISGSEKEPQFKFIYFNHMNLAEKSTIHMRKTPSVSLTSVHPDLMKILGDINSDFTR
ADEDEEIIVKAMSDYWVVGKKSDQRELYVILSQKNANLIEVNEEVKKLCATQFNNIFFLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH