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Report for CCDS23608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23608.1 Public Mus musculus 9 Acaa1b 23 108 98 CCDS HistoryNCBI Gene:235674Re-query CCDS DB by CCDS ID:23608.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010795.4 ENSMUSP00000010795.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010795.4Link to Ensembl Protein Viewer:ENSMUSP00000010795.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000010795Re-query CCDS DB by Protein ID:ENSMUSP00000010795
Original member NCBI NM_146230.3 NP_666342.1 Updated not alive Link to Nucleotide Sequence:NM_146230.3Link to Protein Sequence:NP_666342.1Re-query CCDS DB by Nucleotide ID:NM_146230Re-query CCDS DB by Protein ID:NP_666342
Current member NCBI NM_146230.4 NP_666342.1 Accepted alive Link to Nucleotide Sequence:NM_146230.4Link to Protein Sequence:NP_666342.1Re-query CCDS DB by Nucleotide ID:NM_146230Re-query CCDS DB by Protein ID:NP_666342Link to BLAST:NP_666342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666342.1 424 Q8VCH0 424 100% 0 0

Chromosomal Locations for CCDS 23608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119148338 119148413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119148734 119148879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119148962 119149017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119149271 119149450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119149600 119149790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119150824 119150904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119151816 119151914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119153670 119153712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119153926 119154005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119155745 119155802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119156591 119156684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119156824 119156994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCATCGGCTGCAGGTAGTGCTGGGTCACCTGGCCGGCCGGCCCGAGTCGAGCTCCGCGCTGCAAGCTG
CG
CCCTGCTCCGCTGGCTTCCTGCAGGCCTCGGCCTCCGACGTGGTGGTGGTGCACGGACGGCGCACTCC
C
ATTGGCCGCGCCAGCCGTGGCTGCTTCAAGGACACCACCCCCGACGAGCTTCTGTCGGCCGTGTTGACC
GCG
GTTCTCCAGGACGTGAAGCTAAAGCCTGAGCAGCTGGGAGACATCTCCGTGGGCAATGTGCTTCAGC
CC
GGGGCTGGAGCCATTATGGCACGCATCGCCCAGTTCCTGAGCGGCATCCCAGAGACTGTACCTTTGTC
T
ACGGTCAACAGACAGTGTTCATCGGGACTGCAGGCAGTGGCCAACATTGCTGGTGGCATCAGAAATGGG
TCT
TATGACATTGGCATGGCCTGTGGGGTGGAGTCCATGACCCTGTCCCAGAGAGGGAACCATGGGAATA
TT
TCTTCCCGCCTGCTGGAGAACGAGAAGGCCAGAGACTGCCTGATTCCTATGGGGATAACTTCGGAGAA
T
GTGGCTGAGCGGTTTGGCGTTTCACGGCAGAAGCAGGATGCCTTTGCGCTGGCCTCCCAGCAGAAGGCA
GCA
AGCGCCCAGAGCAGAGGATGCTTCCATGCTGAGATTGTGCCTGTGACAACCACTGTCCTGAATGACA
AG
GGTGACAAGAAAACCATCACTGTGTCTCAGGATGAGGGTGTCCGCCCCAGCACCACCATGCAGGGCCT
G
GCCAAGCTGAAGCCTGCCTTCAAGGATGGAGGCTCTACCACGGCTGGAAACTCCAGTCAGGTGAGTGAT
GGA
GCAGCTGCCGTCCTGCTGGCTCGGAGGTCCAAGGCTGAAGAACTGGGCCTCCCCATCCTTGGGGTCC
TG
AGGTCCTATGCAGTGGTCGGGGTCCCTCCTGACGTCATGGGCATCGGACCTGCCTATGCCATCCCTGC
A
GCCTTGCAGAAAGCAGGGCTGACTGTGAATGACATAGACATCTTTGAGATCAATGAGGCCTTTGCAAGT
CAG
GCCGTCTACTGTGTGGAGAAGTTAGGAATTCCTGCAGAGAAGGTGAACCCGCTGGGGGGTGCAATAG
CC
CTGGGCCACCCCCTGGGCTGCACGGGAGCAAGGCAGGTTGTCACGCTACTCAATGAACTGAAGCGCCG
T
GGCAGACGGGCTTACGGCGTGGTATCCATGTGCATCGGGACTGGGATGGGAGCTGCTGCGGTCTTTGAA
TAC
CCTGGGAACTGA


Translation (424 aa):
MHRLQVVLGHLAGRPESSSALQAAPCSAGFLQASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLT
A
VLQDVKLKPEQLGDISV
GNVLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNG
S
YDIGMAC
GVESMTLSQRGNHGNISSRLLENEKARDCLIPMGITSENVAERFGVSRQKQDAFALASQQKA
A
SAQSRGCFHAEIVPVTTTVLNDKGDKKTITVSQDEGVRPSTTMQGLAKLKPAFKDGGSTTA
GNSSQVSD
G
AAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKA
GLTVNDIDIFEINEAFAS
Q
AVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAAAVFE
Y
PGN




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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