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Report for CCDS24639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24639.1 Public Mus musculus 11 Zfp454 23 108 98 CCDS HistoryNCBI Gene:237758Re-query CCDS DB by CCDS ID:24639.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050595.12 ENSMUSP00000061824.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050595.12Link to Ensembl Protein Viewer:ENSMUSP00000061824.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050595Re-query CCDS DB by Protein ID:ENSMUSP00000061824
Original member Current member EBI ENSMUST00000163301.7 ENSMUSP00000129125.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163301.7Link to Ensembl Protein Viewer:ENSMUSP00000129125.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163301Re-query CCDS DB by Protein ID:ENSMUSP00000129125
Original member Current member NCBI NM_172794.3 NP_766382.2 Accepted alive Link to Nucleotide Sequence:NM_172794.3Link to Protein Sequence:NP_766382.2Re-query CCDS DB by Nucleotide ID:NM_172794Re-query CCDS DB by Protein ID:NP_766382Link to BLAST:NP_766382.2

Chromosomal Locations for CCDS 24639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50872993 50874287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50878043 50878105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50883184 50883276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50883685 50883811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50886369 50886401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAGGACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCA
CCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTA
CAGTAACCTGGTCTCACTGGCAGGTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTG
GAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGGATGCCGCAGATGAACCTCACTTGGGTC
CTCGATCTGCGTGTGAAGCTCAGGTTCCGGTTACAGGGGAAATTACAGTGGCCATGAGTAAGAAATTCCT
CAAGGCAGATATCCCTGAGAAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTC
AATTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCAGAACACTCCAT
CAAAACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCATCACCCATCCAAAGTCAGAGATCTCAAGCAAG
CAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAGCCTTCTCTAAGAGTTCCACCCTTAAGAAGCATCAG
AAACTTCATACCGAAAAACTCAACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGATACAAGTGCCGAG
AATGTGGGAAAGCCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTCCACACTGGCGAGAAACC
ATACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAGCTCTTCCCTTTCCTACCACCAGAAAATCCAT
ACCGGAGAAAAGCCCTTTGAATGTAATGTTTGTGGAAAGGCCTTTATCCGGAACATACATCTTTCCCACC
ATCATAGAATGCACACTGGAGAGAAACCTTTCCAATGCAACCTTTGTGACAAAGCTTTCGTTTGCAGAGC
ACATCTTACCAAACACCAGCACATTCACAGTGGCAAGAAGCCCTATAAATGTAATGAGTGTGGGAAAGCC
TTCAATCAGAGTACAAGTTTTCTGCAGCATCAGAGGATCCACACTGGAGAGAAACCCTTTGAATGCAACG
AGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAACACCAGAGAATCCACACTGGGGAGAAACC
ATATCAATGTATCGAATGTGGCAAAGCTTTCAGGGATAACTCATCCTTTGCACGCCATCGGAAAATTCAC
ACTGGAGAGAAACCTTACAGATGTGGCTTGTGTGAGAAGGCTTTCAGGGACCAGTCAGCCCTAGCACAGC
ATCAGAGAACTCACACTGGGGAAAAGCCTTACACGTGTAACATATGTGAGAAAGCCTTCAGTGACCATTC
GGCCCTTACCCAACATAAGAGAATTCACACGAGAGAAAAACCGTACAAATGTAAAACCTGTGGGAAAGCT
TTTATCCGAAGCACACACCTCATTCAACACCAGAGGATTCACACGGGAGAGAAACCTTACAAATGTAACA
CATGCGGGAAAGCCTTCAACCAGACTGCAAACCTCGCTCAGCACCAGAGGCATCACACTGGAGGAAAGTG
A

Translation (536 aa):
MAVSQLPALVQDLVTFKDVAVLFTQEEWGQLSSAQRALYQDVMLENYSNLVSLAGLLGSQPDMFFPLEEV
EECVSEEAPEGFVLDAADEPHLGPRSACEAQVPVTGEITVAMSKKFLKADIPEKESDQWIAKERACANLF
NWQCQEGQEVKLQQVVLTQQNTPSKLSEQRVRAESSSPIQSQRSQASKTAFECSECGKAFSKSSTLKKHQ
KLHTEKLNPSQKSPMKEKRYKCRECGKAFHQSTHLIHHQRVHTGEKPYQCKDCGKAFSVSSSLSYHQKIH
TGEKPFECNVCGKAFIRNIHLSHHHRMHTGEKPFQCNLCDKAFVCRAHLTKHQHIHSGKKPYKCNECGKA
FNQSTSFLQHQRIHTGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYQCIECGKAFRDNSSFARHRKIH
TGEKPYRCGLCEKAFRDQSALAQHQRTHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKTCGKA
FIRSTHLIQHQRIHTGEKPYKCNTCGKAFNQTANLAQHQRHHTGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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