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Report for CCDS27486.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27486.2 Public Mus musculus 15 Fam83a 23 108 98 CCDS HistoryNCBI Gene:239463Re-query CCDS DB by CCDS ID:27486.2See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27486.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27486.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160942.7 ENSMUSP00000125464.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160942.7Link to Ensembl Protein Viewer:ENSMUSP00000125464.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160942Re-query CCDS DB by Protein ID:ENSMUSP00000125464
Original member Current member NCBI NM_173862.2 NP_776287.2 Accepted alive Link to Nucleotide Sequence:NM_173862.2Link to Protein Sequence:NP_776287.2Re-query CCDS DB by Nucleotide ID:NM_173862Re-query CCDS DB by Protein ID:NP_776287Link to BLAST:NP_776287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776287.2 436 Q8K2P2-1 436 100% 0 0

Chromosomal Locations for CCDS 27486.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57986062 57986541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57992907 57993074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57995214 57995338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58009550 58010087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGTCGGTCAAGGCATGTGGGCAAGATCCGGAAACGTCTGGAAGATGTCAAGAACCAGTGGACCCGGC
CA
GCCAGAGCTGACTTCAGTGATAATGAGAGCGCCCGGCTGGCCACAGATGCCCTCTTGGATGGCGGTCC
A
GAGGCTTACTGGCGCGCCCTCAGTCAGGAAGGAGAGGTAGACTTCCTGTCCTCAGCGGAGGCCCAGTAC
ATC
CAGGCCCAGGCCAAGGAGCCCCCTGATGCCCCCGATTCTGCCGGAGGGGCTGAGTCAGGACCCAGAG
GA
CTGGACTCCTGCTCTTTACAATCAGGTACCTACTTCCCTGTGGCTTCGGAAGGCAGTGAGCCAGCTCT
G
CTGCACACCTGGACTTTGGCTGAGAAGCCCTACCTGAAGGAAAAGTCCAGTGCCACCATCTACTTCCAA
ATG
GACAAACACAACAACATCAGAGATTTGGTCCGCCGCTGCATCTCCCGGGCCAGCCAGGTCCTGGCCA
TT
CTGATGGATGTGTTCACGGATGTGGAGATCCTTTGTGACATTCTAGAGGCAGCCAACAAGCGCGGGGT
A
TTCGTCTGTGTGCTTCTGGACCAGGGCGGGGTGAAGCTCTTCCAGGAGATGTGTGACAAAGTCCAGATC
TCT
GATATTCATCTCAAGAACATCTCCATCAGGAGTGTGGAAGGGGAGGTGTATTGTGCCAAGTCAGGCA
GG
AAATTTGCCGGCCAAATCCAAGAGAAGTTCATCATCTCAGACTGGAGGTTTGTCTTATCCGGATCATA
C
AGCTTCTCTTGGCTCTGTGGACACGTGCACAGGAACATCCTCTCCAAGTTCACGGGGCAAGCGGTGGAG
CTG
TTTGATGAGGAATTTCGACGCCTCTACGCCTCCTCCAAGCCCCTGATGGGTCTGAAGTCCCCGAGGC
TG
GTCGCCCCGTTCCAACCCAACAAGGGCCCAGAAGCTCCCAATGGCCGCCTCAGCGGCACCAGTGACTC
T
GCCAGTGACCGCACCTCCTCCAACCCCTTCAGCAGCCTGTCGACCGGCAGCAATGCCCACAACCAGAGT
CTG
TCCACATCTTCAGGGCCCAGCAGTCCCCTGGCCCCCATCCCACCCACGGTTCCAAGGCTGCAGCCCT
AT
CACAGCACCCGGAGAGCCGTGGCCCCACAGCCTCTCTTGGTCCCCATGAGGCCCCATGAGGGAGCACC
A
GCTCCCTACAGCAGCCTCATGGCCTACAGGCCCACCCGGCTGCAGCTGCAGCAACTCGGCCTGGTGCCC
AGG
GTGACTCACCCCTGGAGGCCTTTTCTACAGGCCTTGCCTCATTTTTAA


Translation (436 aa):
MSRSRHVGKIRKRLEDVKNQWTRPARADFSDNESARLATDALLDGGPEAYWRALSQEGEVDFLSSAEAQY
I
QAQAKEPPDAPDSAGGAESGPRGLDSCSLQSGTYFPVASEGSEPALLHTWTLAEKPYLKEKSSATIYFQ
M
DKHNNIRDLVRRCISRASQ
VLAILMDVFTDVEILCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQI
S
DIHLK
NISIRSVEGEVYCAKSGRKFAGQIQEKFIISDWRFVLSGSYSFSWLCGHVHRNILSKFTGQAVE
L
FDEEFRRLYASSKPLMGLKSPRLVAPFQPNKGPEAPNGRLSGTSDSASDRTSSNPFSSLSTGSNAHNQS
L
STSSGPSSPLAPIPPTVPRLQPYHSTRRAVAPQPLLVPMRPHEGAPAPYSSLMAYRPTRLQLQQLGLVP
R
VTHPWRPFLQALPHF




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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