NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37721.1 Public Mus musculus 18 Zfp438 23 108 98 CCDS HistoryNCBI Gene:240186Re-query CCDS DB by CCDS ID:37721.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063989.6 ENSMUSP00000067049.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063989.6Link to Ensembl Protein Viewer:ENSMUSP00000067049.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063989Re-query CCDS DB by Protein ID:ENSMUSP00000067049
Original member Current member EBI ENSMUST00000234241.1 ENSMUSP00000156983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234241.1Link to Ensembl Protein Viewer:ENSMUSP00000156983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234241Re-query CCDS DB by Protein ID:ENSMUSP00000156983
Original member Current member NCBI NM_001360447.1 NP_001347376.1 Accepted alive Link to Nucleotide Sequence:NM_001360447.1Link to Protein Sequence:NP_001347376.1Re-query CCDS DB by Nucleotide ID:NM_001360447Re-query CCDS DB by Protein ID:NP_001347376Link to BLAST:NP_001347376.1
Original member Current member NCBI NM_178722.5 NP_848837.3 Accepted alive Link to Nucleotide Sequence:NM_178722.5Link to Protein Sequence:NP_848837.3Re-query CCDS DB by Nucleotide ID:NM_178722Re-query CCDS DB by Protein ID:NP_848837Link to BLAST:NP_848837.3

Chromosomal Locations for CCDS 37721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 5210640 5211198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5213119 5214919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 5245386 5245422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGCGGAATTCTTCATCAGTACCACCAAAAGATCAAGGTGAATCAAACATCCGTTCTGGAACAACACAGA
GTGGGAAAACATTACAGAGTAAGAGTCAGTTTAGGACCATTGCACCAAAAGTTGTACCTAAGGTCCTAAC
ATCCAGAGTGCTTCCCTGCCCTTCCTCAATTTCTGACCAAGGGAGTCTGACTCTAATGCCCAAGCCTCTG
GGCATGCCCACCCAGAACTATGCTCTGATGCAGGTGGCTGGCCAAGAGGGGACGTTTTCTCTTGTTGCTT
TCCCAAATGTTGCCTCAGCCCAGCCAGTTCAGAAGCCCAGAATGTCCACACATGAAAACCTTAAACTGCC
TATTCCTCGATACCAACCACTAAGTAGCCAAGGATTAAGAAAGAAACAGGACCTGAGCTCTCCCAAGAGT
GGCTCCAGTGACCCTCCTGGCCCATCCCAGCTATGTCATTTGACCTCTTCCCCACAAGCCTATCCTGATC
CTCATCACAAACCTAGCCTGTGGAAGCAAATGCCAACTTTAAACCCTTCTCCCACCAACATCAACACAGC
TACACTGACCAGTGGTGTTGGCCAAGGAGATTTGAGTCCTCTAGTGACCAACAGCTGTGGCGATCTTGAG
CTTTCTGCCATGCCAGTGTACACTACAGAGGACTCTTCTTCCCAACAGAGCCTCCCAGCAAGTATGCAGA
AGGCAGGTTGTGCCAGGAAGGAGGCACCCACTACACCTGCTATTGCTAGTGAAGAACTCAAAGAACAGTT
AGCTTCTGCACAGACTGTCTTGAGCAGTGCAGTTCAGTTGCTCTCTGTAGTACCCAAGGGTAAACTGCCC
ATCCTGCCCTTACCAAGAGTGAAAACTACAGAGGTGGGCAAAGTGGAATCAGATGCTGATAATGCAGAAT
TGTCTTTATCTGGATGCAGAGCAAACTGTGATGAGAGACTGTCCATCACAGAAGGGTTTGATGCAGCCAC
AGAAATAGCCAGCAAGATAGCTGCTTTGCATGGGTCTAAGCAGAGTGCATGTGAAAGTGCCTTCTGTCCT
GTCACCAAATTGGATCTCAGCCACAAGGCAAAACCCAGCAGTGGAATAAAGAGAAGAGGAAGAAAATGGA
AAGTGCCAGATGAGATTTTAGCATTGCAGGGCAAAAGGAGGAAATGCATTATTGGTATGTGTGGAGATGG
CATAGAAAGAGCAAGAAACAGTCCCCAAGAAGCCAGAGACCAGAAGCCCAGGGTTGCTTCAAGGAAGTAT
CGTAACATCATGCCCAAGCCTGTCCTTGTCCTGTCTGCTTTGGCACCCCTGGCGTCTCATACGGCTGTGC
TGTCTCAGGCTCCCAGCAGCCTAGGTCAAGATGTTCTGAATAATGCCCTGCCTTCAAAATGTCTTGGCTC
CAAGCAAAGTGACAGCTCTACCCCTAAGCCCAGCTCTGTACTCCGAAATGGATTCTCTGGCATTAAAAAG
CCCTGGCACATGTGTCCAGTCTGCAACTACCACTTTCAATTCAAACACCACCTTCTAGACCACATGAATA
CACACACCAACAGACGGCCTTATAGTTGCGGGATCTGTCGCAAGACCTATGTGCGCCCCGGCAGCCTGAG
TGCACATATGAAACTTCACCATGGTGACAACCACCCCAAGAAACTAGTGTGCTGTGAATTTTGTGCAAAA
GTATTTGGTCATGTCCGAGTCTATTTCGGCCATCTGAAGGAGGTGCACAGGGTTGTGATCAGCACAGAGC
CCTCCCCCAGTGAACTGCAGCCAGGAGACACACCAAAAAACAAGAACAGAGATCCTGGTATGCAAGGACC
TGACAACTCACTGGAGAGGGAAACCAAGTCAAGTTTGGAAGAAGATTTTCTTCTAAACCAGGCAGATGAA
GTCAAATTGCAAATCAGATGTGGCCGTTGTCAGATCACTGCTCAGTCTTTTGCTGAAATAAAGTTTCATT
TGCTTCATGTTCACGGAGAGGAAATTCAAGGTCGGCTGCAAGAGATGATCCTACCAGGCAGCAGATCGGA
TGCTCCCCACCAGAAGCAGTACACAGAGAGGAGGAAGCAAATGAAGCCCTATGCCTCTCTGGAGGACTCT
CCAGCATTCCCTAGAGTGAAAAGACTGCCAGCCCCTCATCAGAACAGAGAGGAAGCCCTGGTAGGAAGTG
AAGGTGGCCAGTGGGGAATGGCTGGCTCCCAGCACCCCGCCAAGCTTCTCTGGTCCCACACAGGCTTTAA
CTGCCTGCTCTGTGCTCAGATGCTTGGGCGGAAGGAGGACCTGCTTCTTCACTGGGTACACAAGCACAAC
TGCGAGGACCCCAGCAGACTCTGGGCTCTCCTGGGAAAGTTCTCTAAGCAGGGTGCTCCTGAGCTCCACA
GTGAATCCAGGCTGTGA

Translation (798 aa):
MRNSSSVPPKDQGESNIRSGTTQSGKTLQSKSQFRTIAPKVVPKVLTSRVLPCPSSISDQGSLTLMPKPL
GMPTQNYALMQVAGQEGTFSLVAFPNVASAQPVQKPRMSTHENLKLPIPRYQPLSSQGLRKKQDLSSPKS
GSSDPPGPSQLCHLTSSPQAYPDPHHKPSLWKQMPTLNPSPTNINTATLTSGVGQGDLSPLVTNSCGDLE
LSAMPVYTTEDSSSQQSLPASMQKAGCARKEAPTTPAIASEELKEQLASAQTVLSSAVQLLSVVPKGKLP
ILPLPRVKTTEVGKVESDADNAELSLSGCRANCDERLSITEGFDAATEIASKIAALHGSKQSACESAFCP
VTKLDLSHKAKPSSGIKRRGRKWKVPDEILALQGKRRKCIIGMCGDGIERARNSPQEARDQKPRVASRKY
RNIMPKPVLVLSALAPLASHTAVLSQAPSSLGQDVLNNALPSKCLGSKQSDSSTPKPSSVLRNGFSGIKK
PWHMCPVCNYHFQFKHHLLDHMNTHTNRRPYSCGICRKTYVRPGSLSAHMKLHHGDNHPKKLVCCEFCAK
VFGHVRVYFGHLKEVHRVVISTEPSPSELQPGDTPKNKNRDPGMQGPDNSLERETKSSLEEDFLLNQADE
VKLQIRCGRCQITAQSFAEIKFHLLHVHGEEIQGRLQEMILPGSRSDAPHQKQYTERRKQMKPYASLEDS
PAFPRVKRLPAPHQNREEALVGSEGGQWGMAGSQHPAKLLWSHTGFNCLLCAQMLGRKEDLLLHWVHKHN
CEDPSRLWALLGKFSKQGAPELHSESRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH