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Report for CCDS29189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29189.1 Public Mus musculus 18 Taf7 23 108 98 CCDS HistoryNCBI Gene:24074Re-query CCDS DB by CCDS ID:29189.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066272.5 ENSMUSP00000065645.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066272.5Link to Ensembl Protein Viewer:ENSMUSP00000065645.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066272Re-query CCDS DB by Protein ID:ENSMUSP00000065645
Original member Current member NCBI NM_175770.4 NP_786964.1 Accepted alive Link to Nucleotide Sequence:NM_175770.4Link to Protein Sequence:NP_786964.1Re-query CCDS DB by Nucleotide ID:NM_175770Re-query CCDS DB by Protein ID:NP_786964Link to BLAST:NP_786964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_786964.1 341 Q9R1C0 341 100% 0 0

Chromosomal Locations for CCDS 29189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37642487 37643512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGAGTAAGAACAAAGACGATGCGCCTCATGAGCTAGAGAGCCAGTTTATCTTACGACTGCCCCCAGAAT
ATGCCGCTACGGTGAGGAGGGCAGTGCAGTCTGGGCATGTCAACCTGAAAGACAAACTGAGCATTGAGTT
ACACCCTGATGGGCGTCACGGCATTGTCAGAGTGGATCGAGTGCCCTTGGCTGCAAAATTGGTCGATTTG
CCTTGTGTTACGGAAAGCTTGAAAACCATCGATAAGAAAACCTTTTACAAGACAGCTGATATCTCTCAGA
TGCTTGTAGCCACAGTAGATGGTGACCTATACCCTCCTGTGGAGGAGGCAGCTGCCACTGCTGATCCCAA
AGCAAACAAGAAAAAAGATAAGGACAAAGAGAAAAAGTTTGTTTGGAACCATGGAATTACTCTACCTCTA
AAAAATGTCAGAAAGAGACGGTTCCGGAAGACAGCAAAGAAGAAGTACATTGAATCTCCGGATGTGGAAA
AAGAAGTCAAGCGTCTGCTGAGTACAGATGCAGAAGCTGTCAGTACTCGTTGGGAGATAATTGCTGAAGA
TGAAACAAAGGAGACAGAAAATCAAGGCCTGGACATCTCTTCTCCAGGAATGTCTGGCCACAGGCAAGGC
CATGACTCACTAGAGCATGATGAGCTTCGAGAGATATTCAATGACCTCAGCAGCAGCAGTGAAGATGAAG
AAGACGTAAACATCCTTGACACTGAGGAAGATCTGGAGAGACAGCTACAAGACAAGCTAAATGAATCCGA
CGAGCAACACCAAGAAAATGAAGGAACCAATCAGTTGGTTATGGGAATTCAGAAGCAGATAGATAACATG
AAAGGCAAGCTCCAAGAAACCCAAGACAGGGCAAAGCGCCAGGAAGATCTCATTATGAAGGTAGAAAACC
TGGCTCTCAAGAACAGGTTTCAGGCAGTTCTGGATGAGCTCAAACAAAAAGAAGACCGCGAAAAGGAGCA
GCTTAGCTCTTTGCAGGAAGAGCTGGAATCACTTCTGGAGAAGTGA

Translation (341 aa):
MSKNKDDAPHELESQFILRLPPEYAATVRRAVQSGHVNLKDKLSIELHPDGRHGIVRVDRVPLAAKLVDL
PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKFVWNHGITLPL
KNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKETENQGLDISSPGMSGHRQG
HDSLEHDELREIFNDLSSSSEDEEDVNILDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNM
KGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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