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Report for CCDS20489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20489.1 Public Mus musculus 6 Usp18 23 108 98 CCDS HistoryNCBI Gene:24110Re-query CCDS DB by CCDS ID:20489.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032198.10 ENSMUSP00000032198.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032198.10Link to Ensembl Protein Viewer:ENSMUSP00000032198.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032198Re-query CCDS DB by Protein ID:ENSMUSP00000032198
Original member Current member NCBI NM_011909.2 NP_036039.2 Accepted alive Link to Nucleotide Sequence:NM_011909.2Link to Protein Sequence:NP_036039.2Re-query CCDS DB by Nucleotide ID:NM_011909Re-query CCDS DB by Protein ID:NP_036039Link to BLAST:NP_036039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036039.2 368 Q9WTV6 368 100% 0 0

Chromosomal Locations for CCDS 20489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121252424 121252571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121253762 121253858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121255264 121255409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121261055 121261134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121261367 121261513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121262102 121262194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121262659 121262826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121268546 121268677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121269098 121269147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121270472 121270517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGGCAAGGGGTTTGGGCTCCTGAGGAAACCCTGCCAGTCAGTTGTGGCTGAGCCGCAGCAGTACTCAG
CGCTGGAGGAAGAGAGGACCATGAAGAGGAAGAGAGTGCTGTCTAGAGACCTCTGCAGTGCCTGGGACAG
CCCTCATGGTCTGGTTGGTTTACACAACATCGGACAGACGTGTTGCCTTAACTCCTTGCTTCAAGTGTTC
ATGATGAACATGGACTTCAGAATGATATTGAAGAGGATAACAGTGCCTCGGAGTGCAGAAGAGAGGAAGA
GAAGTGTCCCCTTCCAGCTGCTTTTGCTGCTGGAGAAGATGCAGGACAGTCGACAGAAAGCCGTGCTGCC
CACGGAGCTCGTTCAGTGCCTGCAGAAATACAACGTGCCGTTGTTTGTCCAGCACGATGCTGCTCAACTC
TACCTTACAATCTGGAACCTGACTAAGGACCAGATCACGGACACAGACTTGACAGAGCGGCTGCAGGGTC
TGTTCACCATCTGGACGCAGGAGTCCCTGATTTGCGTGGGCTGTACAGCAGAGAGCAGCAGGAGGAGCAA
ACTGCTCACACTCTCTCTTCCTCTTTTTGATAAGGACGCAAAGCCTCTGAAAACCCTGGAGGATGCCTTG
AGATGTTTCGTCCAGCCCAAAGAGTTAGCAAGCTCCGACATGTGCTGCGAGAGCTGTGGGGAGAAGACGC
CTTGGAAACAGGTTCTGAAGCTGACTCATCTGCCCCAAACCTTGACCATTCACCTCATGAGATTCTCTGC
CAGGAACTCGAGGACGGAAAAGATCTGTCACTCAGTTAATTTCCCTCAGAGCTTGGATTTCAGTCAGGTT
CTGCCAACCGAGGAAGACCTCGGTGATACCAAGGAACAGTCTGAAATACACTATGAACTCTTTGCCGTGA
TTGCCCACGTTGGGATGGCTGACTTTGGTCATTACTGTGCCTACATCCGGAATCCCGTGGATGGAAAGTG
GTTCTGCTTCAATGACTCACATGTTTGTTGGGTCACCTGGAAGGATGTCCAGTGTACCTATGGGAACCAC
AGATACCGCTGGCGGGAAACGGCCTATCTCTTGGTTTACACGAAGACTGGATCCTGA

Translation (368 aa):
MGKGFGLLRKPCQSVVAEPQQYSALEEERTMKRKRVLSRDLCSAWDSPHGLVGLHNIGQTCCLNSLLQVF
MMNMDFRMILKRITVPRSAEERKRSVPFQLLLLLEKMQDSRQKAVLPTELVQCLQKYNVPLFVQHDAAQL
YLTIWNLTKDQITDTDLTERLQGLFTIWTQESLICVGCTAESSRRSKLLTLSLPLFDKDAKPLKTLEDAL
RCFVQPKELASSDMCCESCGEKTPWKQVLKLTHLPQTLTIHLMRFSARNSRTEKICHSVNFPQSLDFSQV
LPTEEDLGDTKEQSEIHYELFAVIAHVGMADFGHYCAYIRNPVDGKWFCFNDSHVCWVTWKDVQCTYGNH
RYRWRETAYLLVYTKTGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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