NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15697.1 Public Mus musculus 2 St8sia6 23 108 98 CCDS HistoryNCBI Gene:241230Re-query CCDS DB by CCDS ID:15697.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003509.9 ENSMUSP00000003509.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003509.9Link to Ensembl Protein Viewer:ENSMUSP00000003509.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003509Re-query CCDS DB by Protein ID:ENSMUSP00000003509
Original member NCBI NM_145838.1 NP_665837.1 Updated not alive Link to Nucleotide Sequence:NM_145838.1Link to Protein Sequence:NP_665837.1Re-query CCDS DB by Nucleotide ID:NM_145838Re-query CCDS DB by Protein ID:NP_665837
Current member NCBI NM_145838.2 NP_665837.1 Accepted alive Link to Nucleotide Sequence:NM_145838.2Link to Protein Sequence:NP_665837.1Re-query CCDS DB by Nucleotide ID:NM_145838Re-query CCDS DB by Protein ID:NP_665837Link to BLAST:NP_665837.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665837.1 398 Q8K4T1 398 100% 0 0

Chromosomal Locations for CCDS 15697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 13656822 13657290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13665420 13665512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13668785 13668897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13672483 13672627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13696828 13696914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13723443 13723532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13792754 13792852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13793344 13793444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGAGATCGGGGGGCACGCTGTTCGCCCTCATAGGCAGCCTGATGCTGCTGCTCCTCCTGCGTATGCTCT
GGTGCCCAGCCGACGCGCCTGCCCGCTCCAGGCTGTTGATGGAGGGAAGCAGAGAGGACACCAGTGGTAC
CTCAGCTGCACTGAAGACACTCTGGAGCCCGACAACCCCGGTACCACGCACCAGGAACAGCACATATCTG
GATGAGAAGACAACCCAAATAACAGAGAAATGCAAAGATCTGCAATATAGCTTGAACTCTTTATCTAACA
AAACGAGACGGTACTCTGAGGATGACTACCTCCAGACCATCACAAACATACAGAGATGCCCATGGAACCG
GCAAGCAGAAGAATATGACAATTTTAGAGCAAAACTGGCTTCCTGTTGCGATGCCATTCAAGACTTCGTG
GTTTCCCAGAACAACACTCCAGTGGGGACTAACATGAGCTACGAGGTGGAAAGCAAGAAACACATCCCCA
TTCGAGAGAACATTTTCCACATGTTTCCAGTGTCGCAGCCTTTTGTGGACTATCCCTATAACCAGTGTGC
AGTGGTTGGTAATGGGGGAATTCTCAACAAGTCTCTCTGCGGAGCAGAAATTGATAAATCTGACTTCGTC
TTCAGGTGTAACCTCCCCCCAATCACAGGGAGCGCTAGTAAAGATGTTGGAAGCAAAACAAATCTTGTGA
CTGTCAATCCCAGCATTATAACCCTGAAGTACCAGAATTTGAAGGAGAAGAAAGCACAGTTTTTGGAGGA
CATCTCCACCTATGGAGATGCATTCCTCCTCCTGCCAGCATTTTCCTATCGGGCCAACACAGGCATCTCT
TTTAAAGTCTACCAAACACTCAAAGAGTCAAAAATGAGGCAAAAGGTTCTCTTCTTCCATCCCAGGTACC
TGAGACACCTCGCTCTTTTCTGGAGAACTAAAGGGGTGACTGCATACCGCTTGTCCACAGGCTTGATGAT
TGCAAGTGTCGCTGTGGAACTGTGTGAAAACGTGAAGCTCTACGGATTCTGGCCTTTCTCTAAGACTATC
GAAGACACCCCACTCAGTCACCACTACTATGATAACATGTTACCTAAGCATGGTTTCCACCAGATGCCTA
AAGAATACAGCCAAATGCTCCAGCTCCATATGAGAGGAATCCTCAAACTGCAATTCAGCAAATGTGAAAC
GGCTTAA

Translation (398 aa):
MRSGGTLFALIGSLMLLLLLRMLWCPADAPARSRLLMEGSREDTSGTSAALKTLWSPTTPVPRTRNSTYL
DEKTTQITEKCKDLQYSLNSLSNKTRRYSEDDYLQTITNIQRCPWNRQAEEYDNFRAKLASCCDAIQDFV
VSQNNTPVGTNMSYEVESKKHIPIRENIFHMFPVSQPFVDYPYNQCAVVGNGGILNKSLCGAEIDKSDFV
FRCNLPPITGSASKDVGSKTNLVTVNPSIITLKYQNLKEKKAQFLEDISTYGDAFLLLPAFSYRANTGIS
FKVYQTLKESKMRQKVLFFHPRYLRHLALFWRTKGVTAYRLSTGLMIASVAVELCENVKLYGFWPFSKTI
EDTPLSHHYYDNMLPKHGFHQMPKEYSQMLQLHMRGILKLQFSKCETA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH