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Report for CCDS59661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59661.1 Public Mus musculus 4 Lactbl1 23 108 98 CCDS HistoryNCBI Gene:242707Re-query CCDS DB by CCDS ID:59661.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178843.2 ENSMUSP00000138455.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178843.2Link to Ensembl Protein Viewer:ENSMUSP00000138455.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178843Re-query CCDS DB by Protein ID:ENSMUSP00000138455
Original member NCBI NM_001243262.1 NP_001230191.1 Updated not alive Link to Nucleotide Sequence:NM_001243262.1Link to Protein Sequence:NP_001230191.1Re-query CCDS DB by Nucleotide ID:NM_001243262Re-query CCDS DB by Protein ID:NP_001230191
Current member NCBI NM_001243262.2 NP_001230191.1 Accepted alive Link to Nucleotide Sequence:NM_001243262.2Link to Protein Sequence:NP_001230191.1Re-query CCDS DB by Nucleotide ID:NM_001243262Re-query CCDS DB by Protein ID:NP_001230191Link to BLAST:NP_001230191.1

Chromosomal Locations for CCDS 59661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136623346 136623357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136626689 136626824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136629219 136629328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136630978 136631135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136632928 136633166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136635767 136635872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136637100 136638084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGAAGACTCGGGCCCGCCAGCAGCCCCATCTTCTGAAAGGGAAGAAGAAATGGTTTTTGTGGGCCCTCA
GTGGCTTCCTCTTCCTGCTCTCAGCGACCATGACTGGCTGCTTCCTGTGGCAGCTCTACCTCCCCAAGCT
GCAGACTGGTTCCTTGAAGCCAGAGGTGCCTCCAGCCCCGGTGAAGATGTGTCCCCGGCACCCTGAGCTT
GTGCCTCTTGCTCACCCCCTGCCGGTGCTGAAGGAGGCCTTGGAGAAGGTGGATGGGATTCTGCGCAAGG
CGATGTTGGCCCCAGGCCTGGCTGCCATGTCTGCCCTCGTCATCCATAATGACACTGTGCTCTGGACTGG
GAACTTCGGGAGGAAGAATGGCTCAGATCCAAATTCTGGAACCCCTAATGAGTATACCATGTACCGGATT
GCCAGCATCTCCAAGATCTTCCCTGTGCTGATGCTGTATCGCCTGTGGGAGGAGGGCATCGTGGACTCCC
TGGACGACCCTCTGGAGCGCTATGCCAGCACATTCTCCATCAACAACCCTCTGGGCACAGCCCAAGGCCC
TGGAGCACAGGGCCCAACGGGGGAATCTGAAGAGATGGGCTCCCTCCCAAGGCCGTCCCCTGTCACTCTC
CGGAGGATGGCCAGTCAGTTGTCAGGACTTCCCCGAAGACTCCGGGGCACTTCACTGCTGTGGAGGGGCA
GCACCCAGGAGGCTCTGAGCCTGCTCAAGGATGATGTCCTGGTGGCTGACCCAGGAACCAGATGCCACTA
CAGCACGCTGGCCTTCTCTCTCCTAGCCCATGTGCTGGCTGCGCACAGGGCACAGGGCGACTATGAGCGC
TGGGTGTCTGAGCAGGTGCTGGAACCGCTGGGGATGAGTGACACCGGCTTTGCACTGACAGGAACAGTGC
GTGCACGTCTGGCTGCTGGCTTCTATGGCAGCGGCAGGTCCGCCCCGCTCTACGATCTGGGCTGGTACCG
GCCATCGGGCCAGATGTACTCGACAGCTGCAGACCTGGCCAGGCTTGCGGCTGCGCTCCTGGGTGCAGGT
CCCCGACGGCTGCTACGGCCCGACAGCCTGGCCACATTGCTAGCACCACTACGCGCCTGCGCCCACGGCT
ACTTTGCTAGTGAAACCGGTACACCCTGGGAGTTCCACGAGAGGCGTGGATACCGCGTGGCGCGCAAGGA
TGGCGACTTGGACGGCTATGCCGCCAGCCTGGCGCTCGTGCCACCGCTGCGCTTGGGATTTGTGCTGTTG
CTAGCCGGGCCTCGCCCTCCCACGCGCGACCTGGTGGCTGACGCCCTGGATACGCTGCTGCCAGCCCTGG
AGCGCGCATTGCGAGAGGCTGAGCTTGCCCCCGCGCCCCCGCCCCGCGCGCGCCCGTTCGCTGGCTTTTT
CACCTTCGCCAACCGCACCTTCTACGAGGTGCGCGCCGCCGGGCCGCGTGGCGAGCTGCGCTTGCGCCAG
TTTGGGCCGCGCGTGGAGGCGCTCGTGCCCGCCGCCTTCCGATCGCTCGCCCTGCGCCACGTGCGCGGCC
GCGTCTTCCAGTTGCACGTGGCGCGCGAGTTCCCGTGCGCGCTGCCGCTCGCCGACGCCTGGTTGTCTCT
GGAGTCCCAGCACGGCCAGCTGGTGCGGTTCTACCCACTGGATCGCCACGGGTTGGCGCCGGGCTTCGAC
GTACCGGGCCTCAACACCTACGGAGTGCTGCGCTTGCCACGCAGGCCAGTGTTCAGCTCCCAGTGA

Translation (581 aa):
MKTRARQQPHLLKGKKKWFLWALSGFLFLLSATMTGCFLWQLYLPKLQTGSLKPEVPPAPVKMCPRHPEL
VPLAHPLPVLKEALEKVDGILRKAMLAPGLAAMSALVIHNDTVLWTGNFGRKNGSDPNSGTPNEYTMYRI
ASISKIFPVLMLYRLWEEGIVDSLDDPLERYASTFSINNPLGTAQGPGAQGPTGESEEMGSLPRPSPVTL
RRMASQLSGLPRRLRGTSLLWRGSTQEALSLLKDDVLVADPGTRCHYSTLAFSLLAHVLAAHRAQGDYER
WVSEQVLEPLGMSDTGFALTGTVRARLAAGFYGSGRSAPLYDLGWYRPSGQMYSTAADLARLAAALLGAG
PRRLLRPDSLATLLAPLRACAHGYFASETGTPWEFHERRGYRVARKDGDLDGYAASLALVPPLRLGFVLL
LAGPRPPTRDLVADALDTLLPALERALREAELAPAPPPRARPFAGFFTFANRTFYEVRAAGPRGELRLRQ
FGPRVEALVPAAFRSLALRHVRGRVFQLHVAREFPCALPLADAWLSLESQHGQLVRFYPLDRHGLAPGFD
VPGLNTYGVLRLPRRPVFSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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