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Report for CCDS39280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39280.1 Public Mus musculus 5 Sbno1 23 108 98 CCDS HistoryNCBI Gene:243272Re-query CCDS DB by CCDS ID:39280.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065263.11 ENSMUSP00000066808.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065263.11Link to Ensembl Protein Viewer:ENSMUSP00000066808.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065263Re-query CCDS DB by Protein ID:ENSMUSP00000066808
Original member Current member EBI ENSMUST00000199808.4 ENSMUSP00000142481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199808.4Link to Ensembl Protein Viewer:ENSMUSP00000142481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199808Re-query CCDS DB by Protein ID:ENSMUSP00000142481
Original member Current member NCBI NM_001081203.2 NP_001074672.1 Accepted alive Link to Nucleotide Sequence:NM_001081203.2Link to Protein Sequence:NP_001074672.1Re-query CCDS DB by Nucleotide ID:NM_001081203Re-query CCDS DB by Protein ID:NP_001074672Link to BLAST:NP_001074672.1
Original member Current member NCBI NM_001359978.1 NP_001346907.1 Accepted alive Link to Nucleotide Sequence:NM_001359978.1Link to Protein Sequence:NP_001346907.1Re-query CCDS DB by Nucleotide ID:NM_001359978Re-query CCDS DB by Protein ID:NP_001346907Link to BLAST:NP_001346907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074672.1 1391 Q689Z5-2 1391 99.8562% 0 2
NP_001346907.1 1391 Q689Z5-2 1391 99.8562% 0 2

Chromosomal Locations for CCDS 39280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124374529 124374671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124376098 124376291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124378470 124378546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124379285 124379422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124381509 124381601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124381683 124381777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124381859 124382005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124384467 124384541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124386830 124386929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124387319 124387390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124387477 124387589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124388525 124388660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124391922 124392053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124392574 124392749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124392839 124393006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124393801 124393995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124395895 124396046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124398412 124398509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124400004 124400186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124400708 124400861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124400962 124401067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124401141 124401276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124402062 124402223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124403960 124404050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124404189 124404322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124405569 124405729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124407091 124407187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124408477 124408577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124410070 124410382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124413185 124413289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124414399 124414527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4176 nt):
ATGGTGGAACCAGGGCAAGATTTACTGCTTGCTGCCTTGAGTGAGAGTGGGATTAGTCCGAATGACCTCT
TTGATGTTGATGGTGGAGATGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAGTCGGTGCCACT
TAGTGCATTAGAACTAGGGTTGGAGACAGAAGCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATGTCC
ACTCCCGCACTGTTAAATGTGAGGCAGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATC
AACTTCCAACTTTGGGATCTACAATTGTAATGACTAAAACACCACCTGCAACAACGAATAGGCAAACCAT
CACTTTGACAAAGTTCATCCAGACCACTGCAAACACACGCCCTTCAGTTTCAGCACCAGCAGTACGAAAT
GCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACTCAAAAATAATAGTTTAAACG
AACTCATGAAACTGAAGCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCTACTGATGTCAGTAA
TGGTGCAGTTAAGAAGGAGTCTTCTAATAAAGAAGTGGCGAGGATATGGATAAATGACATGAAGATGAGG
AGCTTTTCCCCCACCATGAAGGTACCTGTTGTTAAAGAGGAAGATGAACCAGAAGAAGAAGATGAGGAAG
AAATGGGTCATGCAGAGACCTACGCAGAGTATATGCCAATAAAATTAAAAATTGGCCTGCGTCACCCTGA
TGCAGTGGTGGAGACTAGCTCTCTGTCCAGTGTCACTCCTCCTGATGTTTGGTACAAAACCTCCATCTCT
GAAGAGACCATTGATAATGGCTGGCTGTCTGCATTGCAGCTTGAGGCAGTTACCTATGCGGCCCAGCAAC
ATGAAACATTCCTACCTAATGGAGACCGTGCTGGCTTCTTAATAGGCGATGGTGCTGGTGTGGGTAAAGG
CCGGACAATAGCAGGGATCATATATGAAAACTATTTGTTGAGTAGAAAAAGAGCATTGTGGTTTAGTGTA
TCAAATGACTTAAAATATGATGCTGAAAGAGATTTAAGGGATATTGGAGCAAAAAACATTTTGGTCCATT
CGTTAAATAAGTTTAAATATGGTAAGATTTCTTCCAAACACAATGGGAGTGTGAAAAAAGGTGTTATTTT
TGCTACCTATTCTTCCCTTATTGGTGAAAGCCAGTCTGGTGGTAAATATAAGACCAGGTTAAAACAGCTT
CTACACTGGTGTGGTGACGACTTCGATGGAGTGATAGTGTTTGATGAATGTCACAAAGCAAAAAACTTAT
GTCCTGTTGGTTCTTCAAAGCCAACCAAGACAGGCTTGGCTGTTTTAGAGCTTCAGAACAAATTGCCAAA
AGCCAGAGTTGTTTATGCCAGTGCCACTGGTGCTTCTGAACCACGCAACATGGCCTACATGAACCGTCTT
GGAATATGGGGTGAGGGAACTCCATTCAGAGAATTTAGTGATTTTATCCAAGCTGTGGAACGCAGAGGTG
TTGGTGCCATGGAAATCGTTGCTATGGATATGAAGCTTAGAGGAATGTACATTGCACGGCAGCTGAGCTT
TACTGGAGTGACCTTCAAAATTGAGGAAGTTCTTCTTTCTCAAAGCTATGTGAAAATGTATAACAAAGCA
GTCAAGCTGTGGGTTATCGCTAGAGAGCGATTTCAACAAGCTGCAGATTTGATTGATGCTGAGCAGAGAA
TGAAGAAATCGATGTGGGGTCAGTTCTGGTCTGCTCACCAGAGGTTTTTTAAGTACCTGTGTATAGCATC
CAAAGTGAAAAGGGTGGTGCAGCTGGCTCGGGAAGAGATCAAGAACGGGAAGTGTGTTGTAATTGGTCTT
CAGTCTACAGGAGAAGCCAGAACTTTAGAGGCCTTGGAAGAGGGAGGAGGAGAACTAAATGATTTTGTTT
CAACTGCCAAAGGGGTATTGCAGTCACTGATTGAAAAACACTTCCCTGCTCCAGACAGGAAGAAACTTTA
TAGTTTGCTAGGAATCGATTTGACAGCCCCAAGTAACAACAGTTCACCAAGAGATAGTCCTTGTAAAGAA
AATAAAATAAAGAAGCGGAAAGGTGAAGAAATCACTCGAGAAGCCAAAAAAGCACGAAAAGTTGGTGGCC
TCACAGGAAGCAGCTCTGACGACAGTGGAAGTGAGTCTGTGTCTGATAATGACGAAAGCGACTATGAGAG
CTCTAAAAACATGAGCTCTGGGGATGATGACGATTTCAATCCCTTCAGAGATGAGTCCAGTGAAGACAAT
GAGGATGATCCGTGGTTAATTAGGAAAGACCATAAGAAAAGCAAAGATAAAAAAAAGAAGAAAAGTATAG
ATCCAGATTCCATTCAAAGTGCCTTGTTAGCATCAGGTCTTGGATCAAAGCGGCCTAGTTTCTCCTCTGC
ACCAGTCATCTCGCCTGCTTCCAACAGTGCACCAGCCAACAGTAACAGCAACAGCAACAGCAGCCTTGTA
ACAAGTCAAGATGCTGTCGAAAGGGCGCAACAGATGAAGAAAGACCTGCTTGATAAACTAGAAAAATTGG
CTGAAGACCTCCCTCCTAACACCCTGGATGAACTTATCGATGAACTTGGTGGTCCTGAAAATGTGGCTGA
GATGACTGGCCGCAAAGGGCGGGTAGTGAGCAATGATGACGGAAGCATATCCTACGAGTCGAGGTCTGAA
CTTGATGTGCCTGTGGAGATTCTAAACATCACAGAGAAGCAAAGGTTCATGGATGGAGACAAGAATATTG
CTATTATCTCAGAAGCTGCCAGCTCAGGTATTTCATTACAAGCAGATCGGAGAGCTAAAAACCAAAGGCG
AAGAGTTCACATGACTTTAGAATTACCTTGGAGTGCTGATAGGGCGATTCAGCAGTTTGGAAGAACACAC
AGGTCAAACCAAGTGACTGCTCCAGAGTATGTTTTTTTGATTTCGGAACTGGCTGGAGAACAGAGATTTG
CATCTATTGTTGCTAAAAGACTTGAGAGTTTGGGGGCACTTACACATGGTGACAGAAGAGCAACAGAATC
TAGAGATCTGAGCAGATTCAACTTTGACAACAAGTATGGAAGAAATGCTTTAGAAATTGTTATGAAATCC
ATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTACCCTGGAGAATTCTTTAAAGACGTTC
GGCAAGGACTGATAGGAGTGGGCTTGATTAATGTAGAGGATCGCTCAGGAATTCTTACTCTTGATAAAGA
CTATAACAATATAGGAAAGTTCTTAAACAGAATCCTGGGCATGGAGGTGCATCAGCAGAATGCGCTGTTT
CAGTATTTTGCAGACACACTTACTGCAGTTGTTCAGAATGCCAAGAAGAACGGAAGATACGACATGGGAA
TCCTAGATCTGGGTTCTGGAGATGAGAAGGTGAGGAAGAGTGATGTCAAGAAGTTTCTAACTCCAGGGTA
TTCAACCTCCGGCCATGTAGAGTTATACACGATTAGTGTGGAGAGGGGAATGTCCTGGGAGGAAGCAACC
AAGATTTGGGCAGAGCTGACTGGACCAGATGATGGCTTTTACTTATCATTGCAGATAAGAAACAACAAAA
AAACTGCAATCTTAGTTAAAGAAGTAAACCCTAAGAAGAAACTATTTTTAATTTACCGACCAAACACTGG
GAAGCAACTCAAATTAGAAATTTATGCTGACCTGAAAAAGAAATATAAGAAGGTAGTTTCTGATGACGCC
CTGGTACACTGGCTGGATCAGTATAACTCCTCTGCAGACACCTGTACTCACGCATACTGGCGTGGCAATT
GCAAAAAAGCAAGTTTAGGATTGGTATGTGAGATTGGTCTCCGCTGCCGCACGTACTATGTACTGTGTGG
CTCAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATG
CAGATAGTGCGGCTAAGGACCGAAGATGGGCAGCGGATTGTAGGTTTGATCATTCCAGCAAATTGTGTGT
CTCCTCTTGTAAATCTCCTGTCAACTTCAGACCAGTCTCAGCAGCTCGCAGTGCAACAAAAACAGCTGTG
GCAACAGCATCACCCACAGAGCATCACCAACTTGAGCAACCTGTGA

Translation (1391 aa):
MVEPGQDLLLAALSESGISPNDLFDVDGGDAGLATPTPPSVQQSVPLSALELGLETEAAVPVKQEPEPMS
TPALLNVRQQPPSTTTFVLNQINQLPTLGSTIVMTKTPPATTNRQTITLTKFIQTTANTRPSVSAPAVRN
AMPAAPSKDQVQLKDLLKNNSLNELMKLKPPANIAQPVATAATDVSNGAVKKESSNKEVARIWINDMKMR
SFSPTMKVPVVKEEDEPEEEDEEEMGHAETYAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYKTSIS
EETIDNGWLSALQLEAVTYAAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIYENYLLSRKRALWFSV
SNDLKYDAERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLKQL
LHWCGDDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATGASEPRNMAYMNRL
GIWGEGTPFREFSDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKIEEVLLSQSYVKMYNKA
VKLWVIARERFQQAADLIDAEQRMKKSMWGQFWSAHQRFFKYLCIASKVKRVVQLAREEIKNGKCVVIGL
QSTGEARTLEALEEGGGELNDFVSTAKGVLQSLIEKHFPAPDRKKLYSLLGIDLTAPSNNSSPRDSPCKE
NKIKKRKGEEITREAKKARKVGGLTGSSSDDSGSESVSDNDESDYESSKNMSSGDDDDFNPFRDESSEDN
EDDPWLIRKDHKKSKDKKKKKSIDPDSIQSALLASGLGSKRPSFSSAPVISPASNSAPANSNSNSNSSLV
TSQDAVERAQQMKKDLLDKLEKLAEDLPPNTLDELIDELGGPENVAEMTGRKGRVVSNDDGSISYESRSE
LDVPVEILNITEKQRFMDGDKNIAIISEAASSGISLQADRRAKNQRRRVHMTLELPWSADRAIQQFGRTH
RSNQVTAPEYVFLISELAGEQRFASIVAKRLESLGALTHGDRRATESRDLSRFNFDNKYGRNALEIVMKS
IVNLDSPMVSPPPDYPGEFFKDVRQGLIGVGLINVEDRSGILTLDKDYNNIGKFLNRILGMEVHQQNALF
QYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKSDVKKFLTPGYSTSGHVELYTISVERGMSWEEAT
KIWAELTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKLFLIYRPNTGKQLKLEIYADLKKKYKKVVSDDA
LVHWLDQYNSSADTCTHAYWRGNCKKASLGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLASVSGTNVKM
QIVRLRTEDGQRIVGLIIPANCVSPLVNLLSTSDQSQQLAVQQKQLWQQHHPQSITNLSNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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