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Report for CCDS23585.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23585.2 Public Mus musculus 9 Dclk3 23 108 98 CCDS HistoryNCBI Gene:245038Re-query CCDS DB by CCDS ID:23585.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23585.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. This would result in a protein that is 171 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 23585.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111879.4 ENSMUSP00000107510.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111879.4Link to Ensembl Protein Viewer:ENSMUSP00000107510.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111879Re-query CCDS DB by Protein ID:ENSMUSP00000107510
Original member Current member NCBI NM_172928.5 NP_766516.2 Accepted alive Link to Nucleotide Sequence:NM_172928.5Link to Protein Sequence:NP_766516.2Re-query CCDS DB by Nucleotide ID:NM_172928Re-query CCDS DB by Protein ID:NP_766516Link to BLAST:NP_766516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766516.2 790 Q8BWQ5 790 100% 0 0

Chromosomal Locations for CCDS 23585.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111439265 111439352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111467478 111469315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111482618 111482750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111484917 111485084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111488525 111488670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGCCAGCCGCGCCGGTCCTGCGCCCGCCGCCGCCGCCAGCGACCCCCGCCCCGCCGGCACCCAGTCGCC
CT
GCGCCTCCCATTCCGGGCCACCGAGGCCCATGTGACCATTCTCTGAAATGCTTAAGCTCGAAGATCTC
T
GAGAGAAAGCTGCCAGGCCCCTGGTTACCTGCGGGACGAGGACCTCTGGAGAAGCCAGTTCTGGGGCCA
CGT
GGTGCCGTCATGCCGCTGTTCAGCCCTCAGAGCAGCCTCCACTCAGTCCGCGCAGAGCACAGCCCAC
TG
AAGCCCAGGGTGGTGACGGTGGTGAAGCTGGGTGGGCAGCCCCTCCGTAAGGCCACCCTGCTCCTCAA
C
CGGCGCTCAGTGCAGACCTTTGAGCAGCTCCTATCAGACATCTCCGAAGCCTTGGGCTTCCCACGCTGG
AAG
AACGACCGTGTGCGGAAGCTGTTCACCCTCAAGGGCAGGGAGGTGAAGAGTGTGTCTGACTTCTTCC
GG
GAGGGTGATGCTTTCATAGCTATGGGCAAAGAGCCGCTGACATTGAAGAGTATCCAGTTGGCCATGGA
G
GAGCTGTATCCTAAGAACCGGGCTCTTGCCCTGGCCCCTCACAGTAGAGTCCCCTCCCCAAGGCTGAGA
AGC
AGACTTCCCAGCAAGCTTCTGAAAGGAAGTCACCGCTGTGGGGAGGCAGGAAGCTATAGCGCGGAAA
TG
GAGAGTAAGGCAGTCTCTAGGCATCAGGGCAAGACTTCCACAGTGCTGGCCCCAGAAGACAAGGCGAG
G
GCCCAGAAGTGGGTAAGAGGGAAACAGGAGTCAGAACCTGGTGGCCCGCCTTCACCCGGGGCAGCCACT
CAG
GAGGAGACTCATGCAAGTGGAGAGAAACATCTGGGGGTGGAGATCGAAAAGACCTCCGGGGAGATTG
TC
AGATGTGAGAAGTGTAAGAGAGAAAGAGAGCTGCAGTTGGGCCTGCAGAGGGAGCCGTGCCCGCTGGG
A
ACCAGTGAGCTGGACCTGGGGAGAGCTCAGAAGAGGGATTCCGAGAAGTTGGTGAGGACCAAGAGCTGC
AGG
AGGCCTTCTGAGGCAAAATCTACAGATGGAGAGGAAGGGTGGAAGGGTGACAGCCATCGGGGCAGTC
CC
AGGGACCCCCCTCAGGAACTGAGGAGGCCCAACAGCAACTCAGACAAGAAAGAGATCAGAGGCTCAGA
A
AGTCAGGACAGTCATCCTCAGGGGGCACCCAAGGCCCAGAAGGACCTCGTGGAAGGGCCACCAGCTGTA
GAG
GAGGGGCCGATAGACATGAGGAGAGAGGACCGGCACACATGCAGGAGCAAGCATGCCGCCTGGCTCC
GG
AGAGAGCAGCAGGCCGAACCCCCACAGCTCCCCAGAACCCGAGGGGAGGAGAAGCAAGCAGAGCACGA
G
AAGAAGCCAGGCGGCTTAGGAGAGAGGAGGGCGCCAGAGAAGGAGTCTAAGAGGAAGCTAGAAGAGAAG
AGG
CCAGAACGACCCAGTGGCCGGAAGCCGAGGCCCAAGGGCATCATCTCAGCGGATGTGGAGAAGCACT
AT
GACATAGGTGGGGTCATTGGGGATGGCAACTTTGCCACCGTGAAGGAATGCAGGCACCGAGAGACCAA
G
CAGGCTTACGCCATGAAGATGATTGACAAGTCCCAGCTGAAGGGTAAGGAGGACATTGTCGACAGTGAG
ATT
TTAATCATCCAGAGTCTCTCTCATCCCAACATTGTGAAACTGCACGAGGTCTACGAGACGGAGGCGG
AG
ATCTACCTGATCATGGAGTATGTGCAGGGAGGGGACCTTTTTGATGCCATCGTTGAAAATGTGAAGTT
T
CCAGAGCCCGAGGCTGCAGTTATGATCACAGACTTGTGTAAGGCCCTCGTCCACATGCACGACAAGAAT
ATC
GTCCACCGGGACGTGAAACCAGAAAACCTCCTGGTTCAGCGAAATGAAGACAAGTCTATCACCTTGA
AG
CTGGCTGATTTTGGCTTGGCCAAATATGTGGTGAGGCCTATATTTACTGTGTGTGGGACGCCAACATA
T
GTAGCTCCTGAAATTCTTTCTGAGAAAGGTTACGGCCTGGAGGTGGACATGTGGGCGGCAGGTGTGATC
CTA
TACATCCTCTTGTGTGGCTTCCCCCCTTTCCGAAGTCCTGAGAGGGACCAAGACGAGCTCTTCAACA
TC
ATCCAAGTGGGCCAGTTTGAGTTCCTCTCTCCTTACTGGGACAACATTTCTGATGCTGCCAAAGATCT
G
GTGAGAAATTTGCTGGAGGTGGACCCTAAGAAGCGGTACACGGCCGAACAGGTCCTACAGCATCCCTGG
ATT
GAGATGGTTGGGCATACCAACACAGGGAACTCACAGAAGGAGGAGTCCCCCAACAGTTAG


Translation (790 aa):
MPAAPVLRPPPPPATPAPPAPSRPAPPIPGHRGPCDHSLKCLSSKISERKLPGPWLPAGRGPLEKPVLGP
R
GAVMPLFSPQSSLHSVRAEHSPLKPRVVTVVKLGGQPLRKATLLLNRRSVQTFEQLLSDISEALGFPRW
K
NDRVRKLFTLKGREVKSVSDFFREGDAFIAMGKEPLTLKSIQLAMEELYPKNRALALAPHSRVPSPRLR
S
RLPSKLLKGSHRCGEAGSYSAEMESKAVSRHQGKTSTVLAPEDKARAQKWVRGKQESEPGGPPSPGAAT
Q
EETHASGEKHLGVEIEKTSGEIVRCEKCKRERELQLGLQREPCPLGTSELDLGRAQKRDSEKLVRTKSC
R
RPSEAKSTDGEEGWKGDSHRGSPRDPPQELRRPNSNSDKKEIRGSESQDSHPQGAPKAQKDLVEGPPAV
E
EGPIDMRREDRHTCRSKHAAWLRREQQAEPPQLPRTRGEEKQAEHEKKPGGLGERRAPEKESKRKLEEK
R
PERPSGRKPRPKGIISADVEKHYDIGGVIGDGNFATVKECRHRETKQAYAMKMIDKSQLKGKEDIVDSE
I
LIIQSLSHPNIVKLHEVYETEAEIYLIMEYVQGGDLFDAIVENVKFPEPEAAVMITDLCKALVHMHDKN
I
VHRDVKPENLL
VQRNEDKSITLKLADFGLAKYVVRPIFTVCGTPTYVAPEILSEKGYGLEVDMWAAGVI
L
YILLCGFPPFRSPERDQDELFNIIQVGQFEFLSPYWDNISD
AAKDLVRNLLEVDPKKRYTAEQVLQHPW
I
EMVGHTNTGNSQKEESPNS




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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