NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10079.1 Public Homo sapiens 15 RPAP1 24 110 108 CCDS HistoryNCBI Gene:26015Re-query CCDS DB by CCDS ID:10079.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10079.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304330.9 ENSP00000306123.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304330.9Link to Ensembl Protein Viewer:ENSP00000306123.4Re-query CCDS DB by Nucleotide ID:ENST00000304330Re-query CCDS DB by Protein ID:ENSP00000306123
Original member Current member NCBI NM_015540.4 NP_056355.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015540.4Link to Protein Sequence:NP_056355.2Re-query CCDS DB by Nucleotide ID:NM_015540Re-query CCDS DB by Protein ID:NP_056355Link to BLAST:NP_056355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056355.2 1393 Q9BWH6-1 1393 100% 0 0

Chromosomal Locations for CCDS 10079.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41517542 41517691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41517798 41517857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41518006 41518182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41520391 41521147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41521738 41521880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41522098 41522250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41522765 41522960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41523245 41523354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41523771 41523972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41524096 41524254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41524991 41525148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41526898 41527068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41527167 41527301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41527423 41527605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41527860 41528027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41528235 41528336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41529470 41529568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41529864 41529979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41531023 41531202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41534714 41534935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41535512 41535632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41536129 41536218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41536501 41536649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41536945 41537125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4182 nt):
ATGCTGTCGAGACCGAAGCCAGGGGAGTCCGAGGTGGACCTGCTGCACTTCCAGAGTCAGTTTCTCGCAG
CTGGTGCAGCCCCAGCAGTGCAGTTGGTGAAGAAAGGAAATAGGGGCGGTGGTGATGCCAACTCAGACCG
GCCTCCGCTCCAGGACCATCGGGATGTGGTGATGTTGGACAATCTCCCAGATTTGCCCCCAGCTTTGGTC
CCTTCTCCTCCAAAGAGAGCCAGGCCCAGCCCTGGCCACTGCCTGCCTGAGGATGAGGACCCAGAAGAGA
GGCTGAGGAGGCATGATCAGCACATCACTGCTGTCTTGACTAAGATTATTGAACGAGATACAAGTTCAGT
GGCCGTGAATCTGCCTGTGCCCAGTGGTGTTGCTTTCCCTGCTGTGTTCCTTCGCTCGCGGGACACACAG
GGGAAATCAGCAACATCTGGTAAGAGAAGCATCTTTGCCCAGGAAATTGCGGCAAGGAGGATAGCTGAAG
CCAAGGGCCCATCAGTTGGGGAAGTTGTGCCCAACGTGGGCCCACCAGAGGGTGCCGTGACCTGTGAGAC
ACCCACTCCTAGGAACCAGGGCTGCCAGCTTCCTGGGAGCAGCCACAGCTTTCAGGGACCCAATCTGGTC
ACAGGGAAGGGGCTCAGGGATCAAGAAGCTGAGCAGGAAGCCCAGACTATCCATGAAGAGAACATAGCAA
GACTGCAGGCCATGGCTCCTGAGGAGATCCTGCAGGAACAGCAGCGGTTGCTGGCCCAGCTTGACCCCAG
CTTGGTTGCTTTCTTGAGATCTCACAGCCACACGCAAGAGCAAACAGGAGAGACAGCCTCTGAGGAGCAG
AGGCCAGGAGGACCCTCTGCTAATGTCACCAAGGAGGAACCCCTCATGTCAGCTTTTGCCAGTGAGCCCA
GGAAGAGAGACAAGCTGGAGCCAGAAGCCCCAGCTCTGGCATTGCCCGTGACCCCTCAGAAAGAATGGCT
GCACATGGACACTGTCGAGCTGGAGAAGCTCCACTGGACCCAGGACTTGCCCCCTGTCCGGCGGCAGCAG
ACACAGGAGAGGATGCAGGCTCGATTCAGTCTTCAGGGAGAACTACTGGCCCCTGACGTGGACCTGCCCA
CCCACCTGGGTCTGCACCACCATGGAGAGGAGGCAGAGAGAGCGGGGTATTCCCTACAGGAGCTGTTCCA
CCTGACCCGCAGCCAGGTTTCCCAGCAGAGAGCACTGGCACTGCATGTGTTAGCCCAGGTCATCAGCAGG
GCCCAGGCTGGTGAGTTTGGGGACCGGCTAGCAGGCAGTGTCTTAAGCCTCCTTTTGGATGCTGGTTTCC
TCTTCCTACTGCGCTTCTCCTTGGATGACAGAGTGGATGGGGTCATTGCAACCGCCATCCGTGCTCTTCG
GGCTCTGCTGGTGGCTCCTGGAGATGAGGAGCTCCTCGACAGCACCTTCTCTTGGTACCATGGAGCTTTG
ACGTTCCCTCTGATGCCCAGCCAGGAGGACAAGGAGGATGAGGACGAGGATGAAGAATGCCCAGCAGGAA
AAGCAAAAAGGAAAAGCCCTGAAGAAGAAAGCCGGCCTCCACCTGACCTGGCCCGACATGATGTCATCAA
GGGGCTCCTGGCTACCAGCCTGCTGCCTCGGCTGCGCTACGTGCTGGAGGTGACATACCCAGGACCTGCG
GTGGTCCTTGACATCCTGGCTGTGCTCATCCGCCTGGCCCGGCATTCCCTGGAATCAGCCACAAGGGTCC
TGGAGTGCCCTCGGCTGATAGAGACTATAGTTCGAGAGTTCTTGCCCACCAGTTGGTCTCCTGTGGGGGC
AGGGCCTACCCCTAGTCTATACAAAGTACCCTGTGCTACTGCCATGAAACTACTTCGTGTCCTGGCCTCA
GCTGGGAGGAATATTGCTGCCCGGCTGTTGAGCAGCTTTGATCTCCGGAGCCGCCTGTGCCGCATCATAG
CTGAGGCTCCCCAAGAACTGGCCTTGCCCCCAGAGGAAGCTGAGATGCTGAGCACCGAGGCCCTCCGTCT
GTGGGCTGTGGCTGCCTCCTATGGCCAGGGCGGTTACCTTTACAGGGAGCTCTACCCAGTGCTGATGCGG
GCCTTGCAGGTGGTGCCGCGGGAGCTCAGCACCCACCCACCTCAACCCCTGTCCATGCAGCGGATAGCCT
CACTGCTCACTCTCCTCACCCAGCTAACCCTGGCAGCCGGCAGTACCCCTGCTGAAACCATCAGTGATTC
TGCTGAGGCCAGCCTCTCGGCCACCCCTTCCTTAGTCACTTGGACACAGGTGTCTGGGCTCCAGCCTCTT
GTTGAGCCGTGTCTAAGGCAGACCTTGAAGTTGCTGTCCAGACCTGAGATGTGGAGAGCCGTGGGCCCAG
TGCCCGTTGCCTGCCTGTTGTTCCTGGGAGCCTACTACCAGGCCTGGAGCCAGCAACCAAGCTCATGCCC
GGAGGATTGGCTCCAGGACATGCAGCGCCTGTCAGAGGAGCTGCTGCTGCCACTGCTGAGTCAGCCCACA
CTGGGCAGCCTGTGGGATTCCCTTAGGCACTGCTCCCTTCTCTGCAACCCGCTGTCCTGTGTGCCAGCCC
TTGAAGCTCCCCCCAGCCTCGTGTCACTGGGCTGCTCGGGAGGCTGCCCCCGTCTCAGTCTGGCTGGCTC
AGCCTCACCCTTCCCATTCCTCACTGCCCTCCTCTCTCTTCTTAATACCCTGGCCCAGATCCACAAGGGG
CTGTGTGGCCAGCTGGCTGCCATATTGGCTGCCCCGGGACTCCAGAATTACTTCCTCCAGTGTGTGGCTC
CTGGGGCTGCCCCACACCTCACACCTTTCTCTGCATGGGCCCTGCGCCATGAGTACCACCTGCAGTACCT
GGCACTCGCTCTGGCCCAGAAAGCGGCAGCGCTGCAGCCACTGCCAGCCACCCATGCTGCCCTCTATCAT
GGTATGGCCTTGGCCCTGCTGAGCCGGCTGCTGCCCGGAAGTGAGTACCTCACCCATGAGCTGCTGCTGA
GCTGTGTATTCCGGCTGGAGTTCCTCCCGGAAAGAACATCAGGGGGTCCAGAGGCAGCCGACTTCTCTGA
CCAGCTGTCGTTAGGAAGCAGCAGGGTCCCTCGGTGTGGGCAAGGGACTCTGCTGGCTCAGGCCTGCCAG
GACCTCCCCAGCATCCGCAACTGCTACCTGACTCATTGCTCGCCAGCCCGAGCCAGTCTGCTGGCCTCCC
AGGCTCTGCACCGAGGGGAGCTACAGCGAGTCCCAACCCTGCTACTGCCCATGCCTACGGAGCCGCTGCT
GCCCACCGACTGGCCCTTCCTGCCACTGATTCGCCTCTACCACCGGGCTTCAGACACCCCCTCGGGACTC
TCTCCCACAGACACCATGGGCACAGCCATGCGGGTCCTGCAGTGGGTGCTAGTTTTGGAGAGCTGGCGCC
CCCAGGCTCTCTGGGCTGTGCCCCCTGCTGCCCGCCTGGCACGGCTCATGTGTGTGTTCCTGGTGGACAG
TGAGCTGTTCCGGGAGTCCCCAGTACAGCATCTGGTGGCAGCCCTCCTCGCCCAGCTCTGTCAGCCTCAA
GTCTTGCCAAACCTCAACCTGGACTGCCGACTCCCTGGCCTGACGTCTTTCCCTGACCTCTATGCCAACT
TCCTGGATCATTTTGAGGCTGTCTCTTTTGGGGACCACCTCTTTGGGGCCCTGGTCCTCCTGCCCCTGCA
GCGTCGGTTCAGTGTCACCTTGCGCCTTGCCCTCTTTGGGGAACACGTGGGAGCCTTGCGAGCTCTGAGC
CTGCCTCTGACCCAGTTGCCTGTGTCCCTGGAGTGTTACACAGTGCCTCCTGAAGACAACCTGGCCCTCC
TTCAGCTCTACTTCCGGACCCTGGTTACTGGTGCGCTCCGCCCACGTTGGTGCCCCGTGCTCTATGCTGT
GGCTGTGGCTCATGTCAATAGCTTCATCTTCTCTCAGGACCCACAGAGCTCAGATGAGGTCAAAGCTGCC
CGCAGGAGTATGCTGCAGAAAACATGGCTGCTGGCAGATGAGGGTCTCCGGCAGCACCTCCTGCACTATA
AGCTTCCCAATTCCACGCTCCCAGAGGGCTTTGAGCTCTATTCTCAGTTGCCCCCTCTGCGTCAGCACTA
CCTCCAGAGACTGACTTCAACAGTGCTCCAAAATGGGGTATCAGAGACCTAG

Translation (1393 aa):
MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLDNLPDLPPALV
PSPPKRARPSPGHCLPEDEDPEERLRRHDQHITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQ
GKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLV
TGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQ
RPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQ
TQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVISR
AQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGAL
TFPLMPSQEDKEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPA
VVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKLLRVLAS
AGRNIAARLLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMR
ALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPL
VEPCLRQTLKLLSRPEMWRAVGPVPVACLLFLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPT
LGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKG
LCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYH
GMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQ
DLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTDWPFLPLIRLYHRASDTPSGL
SPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQ
VLPNLNLDCRLPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALS
LPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQDPQSSDEVKAA
RRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH