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Report for CCDS15094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15094.1 Public Mus musculus 1 Cul3 23 108 98 CCDS HistoryNCBI Gene:26554Re-query CCDS DB by CCDS ID:15094.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163119.7 ENSMUSP00000130738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163119.7Link to Ensembl Protein Viewer:ENSMUSP00000130738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163119Re-query CCDS DB by Protein ID:ENSMUSP00000130738
Original member NCBI NM_016716.5 NP_057925.1 Updated not alive Link to Nucleotide Sequence:NM_016716.5Link to Protein Sequence:NP_057925.1Re-query CCDS DB by Nucleotide ID:NM_016716Re-query CCDS DB by Protein ID:NP_057925
Current member NCBI NM_016716.6 NP_057925.1 Accepted alive Link to Nucleotide Sequence:NM_016716.6Link to Protein Sequence:NP_057925.1Re-query CCDS DB by Nucleotide ID:NM_016716Re-query CCDS DB by Protein ID:NP_057925Link to BLAST:NP_057925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057925.1 768 Q9JLV5 768 100% 0 0

Chromosomal Locations for CCDS 15094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 80267156 80267287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80269210 80269355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80271524 80271710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80276414 80276548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80277375 80277471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80277964 80278088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80280833 80280940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80281383 80281553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80282623 80282799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80283676 80283821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80286899 80287127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80288744 80288858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80290082 80290242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80304080 80304193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80322859 80323056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 80340246 80340311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGTCGAATCTGAGCAAAGGCACGGGCAGCCGGAAGGACACCAAGATGCGGATCCGGGCCTTTCCGATGA
CCATGGATGAAAAATATGTAAACAGCATTTGGGACCTTCTGAAAAATGCAATTCAAGAAATCCAGCGTAA
GAATAACAGTGGTCTTAGTTTTGAGGAGCTCTATAGAAATGCATATACAATGGTTTTGCATAAACATGGA
GAAAAGCTCTACACTGGACTAAGAGAAGTTGTTACTGAACATCTCATAAATAAGGTGCGAGAAGATGTAC
TAAATTCATTGAATAACAACTTTCTTCAAACACTAAATCAAGCTTGGAATGATCATCAAACAGCCATGGT
GATGATTAGAGACATATTAATGTATATGGACCGTGTATATGTACAACAGAATAATGTAGAAAATGTCTAC
AATTTGGGATTAATAATTTTTCGAGATCAAGTTGTACGGTATGGGTGTATTAGGGATCATCTTCGGCAAA
CTTTATTGGATATGATTGCCAGAGAGCGGAAAGGAGAAGTTGTAGACAGAGGAGCAATAAGAAATGCTTG
CCAGATGTTAATGATTTTAGGTCTTGAAGGAAGATCAGTCTATGAGGAAGATTTTGAGGCTCCGTTTTTG
GAAATGTCTGCAGAATTTTTTCAGATGGAAAGCCAGAAATTTTTAGCAGAAAACAGTGCTTCAGTATATA
TAAAGAAAGTAGAAGCTAGGATTAATGAGGAAATAGAGCGGGTGATGCACTGCCTTGACAAATCCACAGA
AGAGCCTATTGTGAAGGTGGTGGAGAGGGAACTCATTTCCAAGCACATGAAGACTATTGTAGAAATGGAA
AATTCTGGGCTAGTACATATGCTGAAAAATGGAAAGACAGAAGACCTTGCTTGCATGTACAAATTATTTA
GTCGTGTGCCAAATGGTTTGAAGACCATGTGTGAATGTATGAGTTGTTATTTGAGGGAACAAGGAAAAGC
CCTTGTTTCTGAGGAAGGAGAAGGGAAGAATCCTGTTGACTATATCCAGGGCTTATTGGATCTAAAGAGT
AGGTTTGATCGCTTCCTCCAAGAATCCTTCAATAATGACCGGCTCTTTAAACAGACTATTGCTGGGGACT
TCGAGTATTTCTTAAACCTCAACTCTAGGTCTCCTGAATACCTCTCATTATTTATTGATGATAAACTGAA
AAAGGGAGTCAAAGGGCTAACAGAACAAGAAGTAGAAACAATATTGGATAAGGCAATGGTCCTTTTTAGG
TTTATGCAAGAAAAAGATGTATTTGAACGTTATTATAAACAACACCTGGCAAGAAGACTGCTCACAAATA
AAAGTGTTTCTGATGACTCTGAGAAAAATATGATTTCTAAATTAAAGACTGAGTGTGGATGTCAATTCAC
ATCGAAACTGGAAGGAATGTTTAGGGATATGAGCATCTCAAACACAACTATGGATGAGTTCAGGCAACAT
CTACAGGCAACGGGGGTCTCTTTAGGTGGTGTTGATCTCACAGTCCGGGTTCTCACAACGGGATATTGGC
CTACTCAGTCAGCCACACCAAAGTGCAACATCCCACCAGCACCAAGACATGCTTTTGAGATATTTAGAAG
GTTCTACTTAGCCAAACACAGTGGTCGACAGCTCACACTCCAGCATCACATGGGTTCTGCAGATCTCAAT
GCCACCTTTTATGGTCCAGTTAAAAAGGAAGATGGATCTGAGGTTGGTGTTGGCGGTGCACAAGTAACTG
GTTCTAATACACGGAAGCACATACTGCAAGTCTCCACTTTCCAGATGACCATATTAATGCTTTTTAATAA
TAGAGAGAAGTACACATTTGAGGAAATTCAACAAGAGACAGATATCCCTGAAAGAGAACTTGTTAGAGCC
CTCCAGTCCCTCGCCTGTGGTAAACCAACACAGCGGGTCCTCACAAAAGAACCCAAGTCCAAGGAGATAG
AAAGTGGCCACATATTTACAGTTAATGATCAATTCACATCTAAACTACACAGAGTCAAGATTCAAACAGT
TGCAGCCAAACAAGGTGAATCCGACCCAGAAAGGAAAGAAACAAGACAGAAAGTAGATGATGACAGAAAA
CATGAGATAGAAGCTGCTATAGTGCGAATAATGAAGTCTAGGAAGAAGATGCAGCACAATGTTTTAGTAG
CAGAGGTAACTCAGCAACTGAAGGCTCGATTCTTACCAAGTCCAGTTGTTATTAAGAAACGTATTGAAGG
ACTTATTGAGAGAGAATATTTGGCACGAACACCTGAGGATCGCAAAGTATACACATATGTAGCATAA

Translation (768 aa):
MSNLSKGTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHG
EKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVY
NLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFL
EMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEME
NSGLVHMLKNGKTEDLACMYKLFSRVPNGLKTMCECMSCYLREQGKALVSEEGEGKNPVDYIQGLLDLKS
RFDRFLQESFNNDRLFKQTIAGDFEYFLNLNSRSPEYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFR
FMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQH
LQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYLAKHSGRQLTLQHHMGSADLN
ATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRA
LQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRK
HEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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