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Report for CCDS27595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27595.1 Public Mus musculus 15 Rpl8 23 108 98 CCDS HistoryNCBI Gene:26961Re-query CCDS DB by CCDS ID:27595.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004072.9 ENSMUSP00000004072.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004072.9Link to Ensembl Protein Viewer:ENSMUSP00000004072.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004072Re-query CCDS DB by Protein ID:ENSMUSP00000004072
Original member Current member EBI ENSMUST00000229183.1 ENSMUSP00000155657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229183.1Link to Ensembl Protein Viewer:ENSMUSP00000155657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229183Re-query CCDS DB by Protein ID:ENSMUSP00000155657
Original member Current member NCBI NM_012053.2 NP_036183.1 Accepted alive Link to Nucleotide Sequence:NM_012053.2Link to Protein Sequence:NP_036183.1Re-query CCDS DB by Nucleotide ID:NM_012053Re-query CCDS DB by Protein ID:NP_036183Link to BLAST:NP_036183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036183.1 257 P62918 257 100% 0 0

Chromosomal Locations for CCDS 27595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76904313 76904450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76904539 76904680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76904818 76905036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76905856 76905971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76906121 76906279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGGCCGTGTGATCCGAGGGCAGAGGAAAGGCGCGGGTTCTGTTTTCCGTGCGCACGTGAAGCACCGTA
AG
GGCGCCGCGCGCCTACGTGCTGTGGACTTCGCGGAGCGACACGGCTACATTAAAGGCATCGTAAAGGA
C
ATCATTCATGACCCTGGCCGCGGCGCTCCCCTCGCCAAAGTCGTCTTTCGGGATCCCTACCGATTCAAG
AAG
CGGACAGAGCTGTTCATCGCAGCGGAGGGGATCCACACTGGACAGTTCGTGTACTGCGGCAAGAAGG
CC
CAGCTGAATATCGGCAATGTTTTGCCCGTGGGCACCATGCCTGAGGGTACGATCGTGTGTTGTCTGGA
G
GAGAAACCTGGGGACAGGGGCAAGCTGGCCCGAGCCTCCGGGAACTACGCCACAGTCATCTCCCACAAC
CCA
GAGACCAAGAAGACTCGAGTGAAGCTGCCTTCGGGGTCCAAGAAGGTCATTTCCTCTGCCAACAGAG
CC
GTTGTTGGTGTTGTGGCTGGTGGGGGCAGAATTGACAAGCCTATCTTAAAGGCTGGCCGTGCCTACCA
C
AAGTACAAGGCAAAGAGGAACTGCTGGCCACGTGTGCGGGGTGTGGCCATGAATCCTGTGGAGCATCCC
TTT
GGAGGTGGTAACCACCAGCACATTGGCAAACCCTCCACCATCCGAAGAGATGCCCCTGCTGGGCGCA
AA
GTGGGTCTCATTGCTGCCCGCCGGACTGGACGGCTGCGTGGAACCAAAACTGTACAGGAGAAGGAGAA
C
TAG


Translation (257 aa):
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFK
K
RTELFIAAEGIHTGQFVYCGKK
AQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHN
P
ETKKTRVKLPSGSKKVISSANRAVV
GVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHP
F
GGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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