NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19244.1 Public Mus musculus 5 Ppp2r2c 23 108 98 CCDS HistoryNCBI Gene:269643Re-query CCDS DB by CCDS ID:19244.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031003.10 ENSMUSP00000031003.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031003.10Link to Ensembl Protein Viewer:ENSMUSP00000031003.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031003Re-query CCDS DB by Protein ID:ENSMUSP00000031003
Original member NCBI NM_172994.3 NP_766582.1 Updated not alive Link to Nucleotide Sequence:NM_172994.3Link to Protein Sequence:NP_766582.1Re-query CCDS DB by Nucleotide ID:NM_172994Re-query CCDS DB by Protein ID:NP_766582
Current member NCBI NM_172994.4 NP_766582.1 Accepted alive Link to Nucleotide Sequence:NM_172994.4Link to Protein Sequence:NP_766582.1Re-query CCDS DB by Nucleotide ID:NM_172994Re-query CCDS DB by Protein ID:NP_766582Link to BLAST:NP_766582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766582.1 447 Q8BG02 447 100% 0 0

Chromosomal Locations for CCDS 19244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36868821 36868890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36922968 36923065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36926285 36926450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36927531 36927643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36931236 36931413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36940097 36940261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36947068 36947237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36949553 36949644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36952351 36952642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGGCGAGGACACGGACACGCGGAAAATTAACCACAGCTTCCTGCGGGACCACAGCTATGTGACAGAAG
CTGACGTCATCTCCACTGTCGAGTTCAACCACACTGGGGAACTGCTCGCCACAGGTGACAAGGGTGGCCG
GGTGGTTATCTTCCAGCGGGAACCAGAGAGTAAGAACGCACCTCACAGCCAGGGTGAGTACGATGTATAC
AGCACCTTCCAGAGCCACGAGCCGGAGTTTGACTACCTGAAGAGCCTGGAGATAGAGGAGAAAATCAACA
AGATCAAATGGCTCCCGCAGCAGAACGCCGCGCACTCGCTGCTGTCCACCAATGATAAAACTATCAAATT
ATGGAAGATTACCGAACGAGACAAGAGGCCCGAGGGCTACAACCTGAAGGATGAGGAGGGAAAGCTGAAG
GACCTGTCCACGGTGACGTCACTGCAGGTGCCTGTGCTGAAGCCCATGGACCTGATGGTGGAGGTGAGCC
CAAGAAGGACCTTTGCCAATGGCCACACCTACCACATCAACTCCATCTCCGTCAACAGCGACTGTGAGAC
GTACATGTCAGCGGACGACCTACGCATCAACCTCTGGCATCTGGCCATCACTGATCGGAGCTTCAACATT
GTAGACATCAAGCCAGCCAACATGGAGGACCTCACGGAGGTGATCACAGCATCCGAGTTCCATCCGCACC
ACTGCAACCTCTTCGTCTACAGCAGCAGCAAGGGCTCCCTGCGGCTCTGTGACATGCGGGCAGCTGCCTT
GTGCGACAAGCACTCCAAGCTCTTTGAAGAGCCCGAGGACCCCAGCAACCGCTCCTTCTTTTCAGAGATC
ATCTCCTCGGTGTCCGACGTGAAGTTCAGCCACAGTGGGCGCTACATGCTCACGAGGGATTACCTCACGG
TCAAGGTCTGGGACCTGAACATGGAGGCGAGGCCCATAGAGACCTACCAGGTCCACGACTACCTGCGGAG
TAAGCTCTGTTCCCTGTATGAGAGTGACTGCATCTTTGACAAGTTTGAGTGTGCCTGGAATGGGAGTGAC
AGTGTCATCATGACAGGGGCCTACAACAACTTCTTCCGCATGTTCGACCGTAACACCAAGAGGGACGTGA
CACTGGAAGCCTCGCGGGAGAGCAGCAAACCCAGAGCGGTGCTCAAGCCAAGGCGCGTGTGTGTGGGTGG
CAAGCGGCGGCGTGACGACATCAGTGTGGACAGCTTGGACTTCACCAAGAAGATCCTGCACACGGCCTGG
CACCCAGCTGAGAATATCATTGCCATTGCAGCCACCAACAACCTGTACATCTTCCAGGATAAGGTCAACT
CTGACATGCACTAG

Translation (447 aa):
MGEDTDTRKINHSFLRDHSYVTEADVISTVEFNHTGELLATGDKGGRVVIFQREPESKNAPHSQGEYDVY
STFQSHEPEFDYLKSLEIEEKINKIKWLPQQNAAHSLLSTNDKTIKLWKITERDKRPEGYNLKDEEGKLK
DLSTVTSLQVPVLKPMDLMVEVSPRRTFANGHTYHINSISVNSDCETYMSADDLRINLWHLAITDRSFNI
VDIKPANMEDLTEVITASEFHPHHCNLFVYSSSKGSLRLCDMRAAALCDKHSKLFEEPEDPSNRSFFSEI
ISSVSDVKFSHSGRYMLTRDYLTVKVWDLNMEARPIETYQVHDYLRSKLCSLYESDCIFDKFECAWNGSD
SVIMTGAYNNFFRMFDRNTKRDVTLEASRESSKPRAVLKPRRVCVGGKRRRDDISVDSLDFTKKILHTAW
HPAENIIAIAATNNLYIFQDKVNSDMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH