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Report for CCDS16678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16678.1 Public Mus musculus 2 Shc4 23 108 98 CCDS HistoryNCBI Gene:271849Re-query CCDS DB by CCDS ID:16678.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042246.13 ENSMUSP00000043146.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042246.13Link to Ensembl Protein Viewer:ENSMUSP00000043146.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042246Re-query CCDS DB by Protein ID:ENSMUSP00000043146
Original member NCBI NM_199022.2 NP_950187.1 Updated not alive Link to Nucleotide Sequence:NM_199022.2Link to Protein Sequence:NP_950187.1Re-query CCDS DB by Nucleotide ID:NM_199022Re-query CCDS DB by Protein ID:NP_950187
Current member NCBI NM_199022.3 NP_950187.1 Accepted alive Link to Nucleotide Sequence:NM_199022.3Link to Protein Sequence:NP_950187.1Re-query CCDS DB by Nucleotide ID:NM_199022Re-query CCDS DB by Protein ID:NP_950187Link to BLAST:NP_950187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950187.1 626 Q6S5L9 626 100% 0 0

Chromosomal Locations for CCDS 16678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125629615 125629770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125639264 125639517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125649146 125649319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125652475 125652535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125655552 125655720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125657489 125657609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125666273 125666324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125670267 125670320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125678688 125678807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125680087 125680150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125694826 125694896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125722793 125723377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGCGAGAACGCAGCCAGGACAGCCAGGCAGGACTCACGCTGTATGTAGGACTCTTTGGGCACCTGGGGA
TGCTTCACAGGACCAAGTACAGCCGCTTTCGGAACGAGTCCATCACGTCTTTGGACGAAGGGAGCCCCGG
AGGCTCCGTTGGAAACAAGGGCTCGTCGCCGCCTCCCTACCCAGCCCTGGCCCCTCACCTGCCGACTGAG
GATGCCACTGTGTCCAGCCAGGAGAGCCCCACGGCGCTGTGCACCTTGATTCCCCGTATGGCAAGCATGA
AGCTGGCCAACCCCATCACTTTTCTGGGTCTGAAAACCTTCTGCTTGGGTACGAAACAGGTGAGCCGGTT
GAAGCTCCAAGAGAACCAGGATCAGACTCCAAGCCGTCCAGCGTCCCCAGAATCCAATCTAAACAGGACT
GGACCTGCACCTGCACCGGATCCGGACCAGGTGGGACGCAGGCCCACCTCTTTGCGTCCTGATACTTGCC
CACTGCCTGGCCCTGGAGAACCAAGCCCCAGGAGCAAGCAGGACGGGCCCCCTCTGCAGCACCTGTTGGG
GAACGGTCTGAACTACTGTGTGCGGTACATGGGCTGCATTGAAGTGCTGCAATCAATGAGGTCACTGGAT
TTTGGAATGAGAACCCAAGTTACAAGGGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCCCATG
GAGCCATTAAAAAACGAAAGGCTCCCGTTAAGTTCCTGACAACGGTTCTTGGCAAAAGCAATCTTCAGTT
TTCAGGAATGAATATAAAACTGACTGTTTCAACAAGCAGCCTCACACTGATGAACCTTGACAACCAACAG
ATTATTGCAAATCACCAAATGCAATCGATTTCATTTGCCTCTGGAGGGGACCCTGATACCACAGACTATG
TTGCCTATGTAGCTAAAGATCCAGTCAACCAACGAGCGTGCCACATACTGGAGTGTCGCAGTGGAATGGC
CCAAGACGTCATAAGCACCATAGGGCAGGCCTTTGAACTCCGGTTCAAACAGTACTTGAAAAATCCTTCC
TTGAACACTTGGGAAAGGGAGGAGGTACTTGTTGATGGTGCCCCTGAAGACAGAGACCATGACTATTACA
ACTCCATCCCGGGGAAGCAGCCACCTGAAGGCGGCATTTCAGATGTGCGCATCCAGGCTCAAGCTACAGA
CCAAATGGCATACTGCCCTATCCGGTGTGAAAAGTTGTGCTATTTGCCTGGGAACTCCACGTGCAGCGGT
GTGTATAAGAACTGTATGGGACGGAGCAGGCCAATAGGTATCCCGCACGAGAGAGCGGGGCAGGGTGACA
CACCATCGCTGAGGCACTTCTGGAGAGTGGATCTCTTTGACGACCCCTGCTATGTCAATACACAGGCTCT
TCAGAGTATGCACAGCTATGCTGGAAATCAAAGCTCAGCTCTGCCACAGGGGAGCCCCTGGCACCTCGGA
AAGGCACCAGAAACTGTGCAGCCTGGAGCCACGGCCAAGCCTGGGAGCGCACTCGCTTTGCCACACATTA
GGCAGCAGCTGTGGGACGAGGAGTGCTTCCATGGCAAGCTGAGCAGAGGGGCAGCGGAGAAACTTTTGGT
GAAGGATGGGGACTTTTTGGTTCGAGAGAGTGTGACATCTCCCGGCCAGTTTGTACTGAGTGGACTGCAA
GGTGGCCAGGCCAAGCATCTTCTCTTGGTGGATCCAGAAGGCAAGGTGAGGACCAAGGACCATGTGTTTG
ATAATGTTGGCCACCTTATCAAATACCATATGGATAATAATTTGCCAATCATCTCTTCTGGAAGTGAAGT
ACGCCTTAAACAACCAATAAGAAAATATGATAACACAGGACTTTTGCCCCCCAAGAAATGA

Translation (626 aa):
MRERSQDSQAGLTLYVGLFGHLGMLHRTKYSRFRNESITSLDEGSPGGSVGNKGSSPPPYPALAPHLPTE
DATVSSQESPTALCTLIPRMASMKLANPITFLGLKTFCLGTKQVSRLKLQENQDQTPSRPASPESNLNRT
GPAPAPDPDQVGRRPTSLRPDTCPLPGPGEPSPRSKQDGPPLQHLLGNGLNYCVRYMGCIEVLQSMRSLD
FGMRTQVTREAISRLCEAVPGAHGAIKKRKAPVKFLTTVLGKSNLQFSGMNIKLTVSTSSLTLMNLDNQQ
IIANHQMQSISFASGGDPDTTDYVAYVAKDPVNQRACHILECRSGMAQDVISTIGQAFELRFKQYLKNPS
LNTWEREEVLVDGAPEDRDHDYYNSIPGKQPPEGGISDVRIQAQATDQMAYCPIRCEKLCYLPGNSTCSG
VYKNCMGRSRPIGIPHERAGQGDTPSLRHFWRVDLFDDPCYVNTQALQSMHSYAGNQSSALPQGSPWHLG
KAPETVQPGATAKPGSALALPHIRQQLWDEECFHGKLSRGAAEKLLVKDGDFLVRESVTSPGQFVLSGLQ
GGQAKHLLLVDPEGKVRTKDHVFDNVGHLIKYHMDNNLPIISSGSEVRLKQPIRKYDNTGLLPPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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