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Report for CCDS36526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36526.1 Public Mus musculus 12 Golga5 23 108 98 CCDS HistoryNCBI Gene:27277Re-query CCDS DB by CCDS ID:36526.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021609.9 ENSMUSP00000021609.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021609.9Link to Ensembl Protein Viewer:ENSMUSP00000021609.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021609Re-query CCDS DB by Protein ID:ENSMUSP00000021609
Original member Current member EBI ENSMUST00000179218.8 ENSMUSP00000137305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179218.8Link to Ensembl Protein Viewer:ENSMUSP00000137305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179218Re-query CCDS DB by Protein ID:ENSMUSP00000137305
Original member Current member NCBI NM_001199004.1 NP_001185933.1 Accepted alive Link to Nucleotide Sequence:NM_001199004.1Link to Protein Sequence:NP_001185933.1Re-query CCDS DB by Nucleotide ID:NM_001199004Re-query CCDS DB by Protein ID:NP_001185933Link to BLAST:NP_001185933.1
Original member Current member NCBI NM_013747.4 NP_038775.1 Accepted alive Link to Nucleotide Sequence:NM_013747.4Link to Protein Sequence:NP_038775.1Re-query CCDS DB by Nucleotide ID:NM_013747Re-query CCDS DB by Protein ID:NP_038775Link to BLAST:NP_038775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185933.1 729 Q9QYE6 729 100% 0 0
NP_038775.1 729 Q9QYE6 729 100% 0 0

Chromosomal Locations for CCDS 36526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102472028 102472565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102474546 102474773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102476170 102476389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102476797 102476920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102479598 102479801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102484404 102484574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102487120 102487248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102489419 102489517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102492013 102492238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102493754 102493859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102495700 102495763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102497447 102497527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGTCTTGGTTTGCTGATCTTGCTGGAAGGGCTGAAGATCTTTTAAACCGAGTGGATCAGGGGGCTGCAA
CA
GCTCTCAGAAAGGAGAATACCAGCAACATCTTTTATAGCAAAAATACTGACTATCCTGAACTTCAGCA
G
CAAAACACAGATTCAAATTACCAGACCGGACAGAAAGCTAACTATATTTCCTCAGCTGCTGATAACATC
CGA
CATCAGAAAGCCACGATCCTAGCTGGCACAGCGAACGTGAAAGTCGGATCCAGGACAGTCGGGGATG
CC
ACCCATCCCACCGAGCATGCGTCTGCCCCTAGGCCTTCATCCCAGTTTGTTCGGAGGAAAAAATCAGA
G
CCTGATGATGAGCTGCTATTTGATTTTCTTAACAGTTCCCAAAAAGAGCCCACTGGGAGAGTGGAAGTC
AAG
AAAGAGAAGGGCAGAGCTCCTGTCTCTCCAAGTTCTCCGTCAGGTGTCAGTTCTGTCAACACCAGTG
TA
ACCACCACCAAGGCCATGGGAGGAAACGCTGGGAGCCAAAGTCCTGGAGTGAACAGTTCGGATTCTGT
G
CCTGAAGTTCATAAGGAACCCTCAGAGGAGAGCACGGCCCCAAGTGCCACCAGCGAGGAGCACAGCTCT
ACA
CCTAGTGACGGTAGCAGCAGGTCGCAGGAGCTGTCCAATCTCCGACTGGAGAATCAGTTGCTCAGGA
AT
GAAGTCCAGTCTTTAAATCAGGAAATGGCCTCATTACTCCAGAGATCCAAAGAAACTCAAGAAGAATT
A
AATAAGGCAAGAGTAAGAGTTGAAAAATGGAATGTTGACAATTCAAAGAGCGATCGCATAACTCGAGAA
CTG
CGAGCGCAAGTAGATGACCTCACCGAAGCAGTGGCCGCAAAGGACTCCCAGCTGGCTGTCCTCAAAG
TG
CGACTGCAGGAGGCTGACCAGGTGCTAAGTTCCCGCACAGAAGCACTAGAAGCCTTAAGGAGTGAAAA
G
TCACGAATAATGCAGGATCACAAGGAAGGTAGTAGCCTACAGAATCAAGCTCTGCAAACTCTTCAAGAG
AGG
CTGCATGAAGCTGATGCCACTCTAAAGAGAGAGCAAGAGAGCTACAAACAAATGCAGAGTGAGTTTG
CT
GCACGCCTTAACAAAATGGAAGTGGACCGTCAGAACTTGGCAGAAGCAGTTACTCTGGCAGAAAGAAA
G
TACTCCGAGGAGAAGAAGAAGGTTGATGAACTCCAGCAGCAAGTCAAGCTACACAGGGCAAGCTTGGAG
TCG
GCTAAGCAGGAGTTAGTTGACTACAAGCAGAAAGCTACACGGATACTCCAATCTAAAGAAAAACTGA
TC
AACAGCTTAAAGGAAGGCTCAAGCTTTGAAGGCCTAGAGAGCAGCACGGCTAGCAGCATGGAATTGGA
A
GAACTTCGGCATGAGAAGGAGATGCAGAAGGAGGAGATCCAGAAGCTGATGGGCCAGATGCATCAGCTG
AGG
TCTGAGCTACAGGACATGGAGGCTCAGCAGGTTAGTGAAGCTGAATCAGCAAGAGAACAATTACAAG
AT
CTGCAAGACCAGATAGCTAAGCAGAGGACATCTAAGCAAGAGCTGGAGACGGAGCTGGAACGAATGAA
G
CAGGAATTCCGCTACATGGAGGAGGATCTGCATAGAACAAAGAACACACTGCAAAGCAGGATTAAAGAT
AGG
GAGGAAGAAATTCAAAAACTGAGGAATCAGCTTACCAACAAAACTTTAAGCAACAGCAGCCAGTCAG
AG
CTAGAAAGCCGGCTCCATCAGCTAACGGAAACACTCATCCAGAAACAGACCATGCTGGAGAGCCTCAG
C
ACAGAAAAGAACTCCCTGGTCTTCCAGCTGGAGCGCCTTGAGCAGCAGGTGCATTCTGCCTCCTCGGGG
CCC
AACAGTGGATCTGCCATTAACATGTCTGGAGTCGACAGTGGTGAAGGGACACGCCTGCGAAATGTTC
CT
GTTCTTTTTAATGACACCGAAACTAATCTGGCAGGAATGTATGGGAAGGTTCGAAAAGCTGCTAGCTC
C
ATTGACCAATTTAGTATTCGCCTGGGAATTTTTCTCAGAAGATACCCCATAGCACGAGTGTTTGTAATC
ATC
TACATGGCTTTGCTGCACCTCTGGGTCATGATCGTACTGCTGACTTACTCACCAGAAATGCACCATG
AC
CAACCGTACGGCAAGTGA


Translation (729 aa):
MSWFADLAGRAEDLLNRVDQGAATALRKENTSNIFYSKNTDYPELQQQNTDSNYQTGQKANYISSAADNI
R
HQKATILAGTANVKVGSRTVGDATHPTEHASAPRPSSQFVRRKKSEPDDELLFDFLNSSQKEPTGRVEV
K
KEKGRAPVSPSSPSGVSSVNTSVTTTKAMGGNAGSQSP
GVNSSDSVPEVHKEPSEESTAPSATSEEHSS
T
PSDGSSRSQELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQE
ELNKARVRVEKWNVDNSKSDRITRE
L
RAQVDDLTEAVAAKDSQLAVLKVRLQEADQVLSSRTEALEALRSEKS
RIMQDHKEGSSLQNQALQTLQE
R
LHEADATLKREQESYKQMQ
SEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDELQQQVKLHRASLE
S
AKQELVDYKQKATRILQ
SKEKLINSLKEGSSFEGLESSTASSMELEELRHEKEMQKEEIQKLMGQMHQL
R
SELQ
DMEAQQVSEAESAREQLQDLQDQIAKQRTSKQELETELERMKQEFRYMEEDLHRTKNTLQSRIKD
R
EEEIQKLRNQ
LTNKTLSNSSQSELESRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQVHSASSG
P
NSGSAINMSGVDSGE
GTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVI
I
YM
ALLHLWVMIVLLTYSPEMHHDQPYGK



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 Genome Browser Links:   Ensembl Genome Browser
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