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Report for CCDS39461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39461.1 Public Mus musculus 6 Ubn2 23 108 98 CCDS HistoryNCBI Gene:320538Re-query CCDS DB by CCDS ID:39461.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160583.7 ENSMUSP00000124043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160583.7Link to Ensembl Protein Viewer:ENSMUSP00000124043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160583Re-query CCDS DB by Protein ID:ENSMUSP00000124043
Original member Current member NCBI NM_177185.4 NP_796159.3 Accepted alive Link to Nucleotide Sequence:NM_177185.4Link to Protein Sequence:NP_796159.3Re-query CCDS DB by Nucleotide ID:NM_177185Re-query CCDS DB by Protein ID:NP_796159Link to BLAST:NP_796159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796159.3 1314 Q80WC1-1 1314 100% 0 0

Chromosomal Locations for CCDS 39461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38434173 38434598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38440455 38440547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38452870 38452971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38461475 38461612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38462963 38463066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38463554 38464043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38470152 38470222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38479064 38479193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38481804 38481922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38482503 38482616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38483119 38483262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38484075 38484125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38487108 38487150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38490384 38491931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38498688 38498919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38499187 38499276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38502238 38502287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGGCGGAGCCGCGCAGAGTCGCGTTCATTAGCCTGTCACCGGTGAGGCGACGCGAGGCCGACTTCGCGG
GCGCCGAGCGCGAGCCCCCCCGACTGGAGCCGCAGCCGTACCGCGAGCCGGCCCGGGCGGAGCCGGCCCC
CCGCGCTGACGCGCAGCCCCCGGCGCGCGACAAGCCGCTCCCCCAGCGCGAGGTCAGCCGCGCCGAGCCG
CCCATGGCGCTGCAGCGCGAGCCCCCGCGGCCCGAGCCGCCGCCGCCGCCGCTGCCCCTGCAGACTCCCC
CTCCGCGGGAGTCGGCTTCCCGGGCGGAGCCGCCGCCGCGACCGCCGAAGGAGACGGTTCGCCTGGAGCT
GGTGCTCAAGGACCCCACGGACGAAAGCTGCGTGGAGTTCAGCTACCCGGAGCTGCTGCTGTGCGGAGAA
CAACGGAAGAAACTTGTTCATACAGAAGATCCATTTACTGATGAGCATAAGGAGAGGCAAGAAGTGGAAA
TGTTGGCTAAGAAGTTTGAAATGAAATATGGTGGGAAAGCCCGTAAACACCGGAAGGATCGGCTACAAGA
TTTAATTGATATAGGCTTTGGCTATGATGAGACAGATCCATTTATTGATAACTCAGAGGCTTATGACGAA
TTAGTCCCTGCTTCTCTAACAACAAAATATGGAGGCTTCTATATCAACACTGGCACTCTGCAGTTCCGCC
AGGCTTCAGACACTGAAGAAGATGATTTCACAGATAACCAAAAGCACAAGCCACCCAAGGTTCCCAAAAT
AAAAGAAGATGATATAGAGGTAAAGAAGCGGAAGCGGAAAGAGGAAGGGGAAAAAGAAAAGAAGCCAAGG
AAAAAAGTACCCAAGCAACTGGGAGTTGTGGCTCTCAATTCACACAAGTCTGAAAAAAAGAAAAAGCGGT
ATAAAGATTCCCTTTCTCTGGCTGCCATGATACGGAAATTTCAAAAAGAGAAGGATGCATTGAAGAAGGA
ATCTACCCCTAAAGTCCCAGTGACCCCATCATCTTCCTCTCTGCCTAAGCCCCCTTGTGTCACAACAGCC
CTTGGGGATGACATCCCGGACTTAGGTCTGAACAGTGCTGACCCAGACCTCCCTATTTTTGTTAGCACAA
ATGAACATGAACTGTTTCAGGAAGCTGAAAATGCCCTAGAGATGCTAGATGATTTTGACTTTGACAGATT
ACTGGATGCTACTTCTGACGGAAGTCCCCTCTCTGAGTCAGGGGGAGAAAATGGAAATACCACCCATCCC
ACCTTCCCCTCTCAGGTTGTGCCCAAGGTGGTACCTACACTTCCAGAGGGTCTACCCGTGCTTCTTGAGA
AACGCATTGAGGACCTTCGTGTAGCTGCCAAACTTTTTGATGAAGAAGGAAGGAAAAAATTCTTTACACA
GGATATGAATAATATTCTTCTGGACATCGAGTTACAGCTACAAGAACTAGGTCCTGTCATTCGTAGTGGT
GTCTACTCCCATCTTGAAGCATTTGTGCCATGCAATAAGGAAACACTGGTAAAACGTCTAAAGAAGTTAC
ACCTTAATGTTCAGGATGATCGTTTAAGAGAACCTCTACAGAAGCTGAAGCTGGCAGTTAGCAACGTCAT
GCCTGAACAGCTGTTTAAATACCAGGAGGACTGCCAGGCTCGCAGTCAAGCCAAATGTGCCAAGTTGCAA
GCAGATGAAGAACGGGAAAAAAATGGATCCGATGATGATGACGATGAGAAACCAGGGAAGCGAGTCATCG
GCCCACGAAAGAAATTCCACTGGGATGACACCATCAGAACTTTGTTATGTAACCTTGTTGAGATCAAATT
GGGATGCTATGAATTAGAGCCAAATAAAAGCCAGTCTGCTGAGGATTATCTTAAATCCTTCATGGAGACG
GAGGTGAAGCCACTGTGGCCTAAGGGCTGGATGCAGGCAAGAATGCTTTTTAAGGAAAGCCGGAGTGTGC
ATAATCATCTTACTTCTGCTCCGGCAAAGAAAAAGGTGATTCCTGCATCAAAACCCAAAGTCAAGGAATG
TAGCCCCAAAAAAGACCCCAAAGCTCCTGCATCCGTGGTGGCTTCAGGTGGCGGTCCTTCCACGAGCTCC
AGCACATCCATCGTTGCCTCAGCCAGCTCTAGCTCAGCACCAGCCCAAGAAACCATCTGCCTTGATGACT
CCCTCGATGAAGACCTTTCTTTCCCCTCAGCCTCACTGGATCTTGTATCTGAAGCTCTAGCTGTCATCAA
CAATGGGAACAAGGGCCCCTCAGTTGGTTCAAGGCTAAATGTGCCAACTACAAAACCTCGTCCAGGACTG
AGAGAAGAAAAGCTAGCAAGTATCATGAGTAAGTTACCACTGGCTACTCCCAAAAAACTAGATTCTACTC
AGACTGCTCACTCATCAAGTCTTATTGCTGGTCACACGGGGCCAGTACCAAAGAAACCCCAGGATTTAGC
TCATACTGGTATTTCTTCAGGCCTTATTGCTGGTTCTTCAATTCAGAACCCTAAAGTTTCCTTAGAACCT
TTGCCAGCCAGGCTACTCCAGCAAGGACTGCAAAGGTCAAGCCAGATACATGCTTCTTCCTCTTCACAGA
CTCATGTCTCCTCCTCCCAAGCCCAAGCTGCTGCCTCCTCTCATGCTCTGGGAACATCAGAGGCCCAAGA
TGCTTCTTCGTTAACACAAGTCACAAAGGTGCACCAGCACTCAGCTGTCCAGCAGAACTATGTGTCTCCA
TTGCAAGCCACCATTAGTAAATCACAGACCAACCCAGTGGTGAAATTAAGTAATAACCCCCAACTTTCCT
GTTCGTCCCAACTACTCAAGACTTCAGATAAGCCACTGATGTATCGCCTCCCTTTGTCTACCCCATCACC
TGGAAATGGTTCTCAGGGGCCCCACCCCCTAGTTTCTAGGACAGCACCGAGTACCACTACCTCCAGTAAC
TATTTAGCCAAGGCTATGGTGTCACAAATCTCCACGCAGGGTTTCAAATCTCCCTTCTCAATGGCTGCAT
CTCCCAAACTTGCCGCATCTCCCAAACCTGCCACATCTCCCAAGCCTTTGCCCTCACCTAAGCCTTCTGT
TTCACCCAAGCCCTCTCTGTCAGCTAAGCCTTCAATATCTACTAAACAGATTTCTAAATCCAACCCAGCT
CCCAAGCCTGCTGTATGCCCAAGTTCTTCTAGTCCAAACACACTAGTAGCCCAGAGTAGCCACTCCACAA
GTAACAACCCTGTCCATAAACAGCCCAGTGGAATGAACATCAGCAGACAGTCTCCCACTCTGAATTTGTT
GCCCTCAAATCGCACTTCTGGCCTTCCGACTACAAAAACTCTTCAGGCCCCTTCTAAACTAACAAACTCA
TCATCCACTGGAACTGCTGGGAAGAACAGCTTGAGTGGAATCCCAATGAATGTACCTGCCAGCAGAGGTA
GCAACCTTAACTCAAGTGGAGCTAATAGGACTAGTCTATCTGGGGGAACAGGAAGTGGAACACAGGGTGC
TACTAAACCGTTGTCTACTCCACATAGACCAACCTCTGCCTCAGGGTCTTCAGTGGTAACAGCCAGTGTG
CAGTCCACAGCAGGAGCATCATTATTGGCTAATGCCTCACCTCTGACTCTCATGACATCACCTTTGTCTG
TAACAAATCAAACTGTGACTCCTTTTGGGATGCTGGGTGGCCTTGTTCCAGTGACCATGCCCTTCCAGTT
TCCCTTGGAGCTACTTGGCTTTGGAACGGACACAGCTGGAGTGACAGCCACCTCGGGATCTACCTCAGCG
GCTCTCCATCACAGCCTAACCCAGAATTTACTAAAGAGTTTACAGCCAGGAGCTCAGCACGCGGCAGCCC
TTCCTCACTCTCCTCTGCCTGCTCACTTACAGCAAGCGTTTAACGATGGAGGCCAAAGTAAAGGGGACAC
TAAGTTACCACGGAAACCTCAGTGA

Translation (1314 aa):
MAEPRRVAFISLSPVRRREADFAGAEREPPRLEPQPYREPARAEPAPRADAQPPARDKPLPQREVSRAEP
PMALQREPPRPEPPPPPLPLQTPPPRESASRAEPPPRPPKETVRLELVLKDPTDESCVEFSYPELLLCGE
QRKKLVHTEDPFTDEHKERQEVEMLAKKFEMKYGGKARKHRKDRLQDLIDIGFGYDETDPFIDNSEAYDE
LVPASLTTKYGGFYINTGTLQFRQASDTEEDDFTDNQKHKPPKVPKIKEDDIEVKKRKRKEEGEKEKKPR
KKVPKQLGVVALNSHKSEKKKKRYKDSLSLAAMIRKFQKEKDALKKESTPKVPVTPSSSSLPKPPCVTTA
LGDDIPDLGLNSADPDLPIFVSTNEHELFQEAENALEMLDDFDFDRLLDATSDGSPLSESGGENGNTTHP
TFPSQVVPKVVPTLPEGLPVLLEKRIEDLRVAAKLFDEEGRKKFFTQDMNNILLDIELQLQELGPVIRSG
VYSHLEAFVPCNKETLVKRLKKLHLNVQDDRLREPLQKLKLAVSNVMPEQLFKYQEDCQARSQAKCAKLQ
ADEEREKNGSDDDDDEKPGKRVIGPRKKFHWDDTIRTLLCNLVEIKLGCYELEPNKSQSAEDYLKSFMET
EVKPLWPKGWMQARMLFKESRSVHNHLTSAPAKKKVIPASKPKVKECSPKKDPKAPASVVASGGGPSTSS
STSIVASASSSSAPAQETICLDDSLDEDLSFPSASLDLVSEALAVINNGNKGPSVGSRLNVPTTKPRPGL
REEKLASIMSKLPLATPKKLDSTQTAHSSSLIAGHTGPVPKKPQDLAHTGISSGLIAGSSIQNPKVSLEP
LPARLLQQGLQRSSQIHASSSSQTHVSSSQAQAAASSHALGTSEAQDASSLTQVTKVHQHSAVQQNYVSP
LQATISKSQTNPVVKLSNNPQLSCSSQLLKTSDKPLMYRLPLSTPSPGNGSQGPHPLVSRTAPSTTTSSN
YLAKAMVSQISTQGFKSPFSMAASPKLAASPKPATSPKPLPSPKPSVSPKPSLSAKPSISTKQISKSNPA
PKPAVCPSSSSPNTLVAQSSHSTSNNPVHKQPSGMNISRQSPTLNLLPSNRTSGLPTTKTLQAPSKLTNS
SSTGTAGKNSLSGIPMNVPASRGSNLNSSGANRTSLSGGTGSGTQGATKPLSTPHRPTSASGSSVVTASV
QSTAGASLLANASPLTLMTSPLSVTNQTVTPFGMLGGLVPVTMPFQFPLELLGFGTDTAGVTATSGSTSA
ALHHSLTQNLLKSLQPGAQHAAALPHSPLPAHLQQAFNDGGQSKGDTKLPRKPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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