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Report for CCDS29846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29846.1 Public Mus musculus 19 Pkd2l1 23 108 98 CCDS HistoryNCBI Gene:329064Re-query CCDS DB by CCDS ID:29846.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042026.4 ENSMUSP00000045675.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042026.4Link to Ensembl Protein Viewer:ENSMUSP00000045675.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042026Re-query CCDS DB by Protein ID:ENSMUSP00000045675
Original member Current member NCBI NM_181422.3 NP_852087.2 Accepted alive Link to Nucleotide Sequence:NM_181422.3Link to Protein Sequence:NP_852087.2Re-query CCDS DB by Nucleotide ID:NM_181422Re-query CCDS DB by Protein ID:NP_852087Link to BLAST:NP_852087.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852087.2 760 A2A259 760 100% 0 0

Chromosomal Locations for CCDS 29846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44148507 44148548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44149153 44149276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44149529 44149647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44150412 44150529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44152033 44152154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44152364 44152462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44153659 44153779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44154064 44154245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44154424 44154594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44155448 44155676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44155841 44156065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44157052 44157305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44157637 44157764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44191421 44191534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44192040 44192274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGAATAGTATGGAAAGCCCCAAGAATCAGGAGCTACAAACCCTGGGGAACAGAGCCTGGGACAATCCTG
CC
TACAGCGACCCTCCTTCCCCGAACAGGACGCTGAGGATCTGCACTGTCTCCAGTGTGGCTCTCCCTGA
G
ACTCAACCCAAAAAGCCAGAAGTCAGATGCCAGGAGAAGACACAGAGAACCCTGGTGTCCAGCTGCTGT
CTC
CATATCTGTCGGAGCATCAGAGGACTGTGGGGGACAACGCTGACTGAGAACACAGCCGAGAACAGGG
AG
CTTTATGTCAAGACCACCCTGAGGGAGCTTGTGGTATACATAGTGTTCCTCGTGGACATCTGTCTGTT
G
ACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACC
CCA
TCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGATTTTGCTCAGGGCC
CA
CTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTT
C
ATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGT
GTG
GTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATC
AG
CTCCCCTTTGGACCTCAGAACGGCACAGCGTGGACATACCATTCCCAGAATGAGCTGGGTGGCTCCTC
C
CACTGGGGCAGGCTCACAAGCTACAGCGGGGGTGGCTACTACTTGGATCTTCCAGGATCCCGACAAGCC
AGT
GCAGAGGCCCTCCAAGGACTCCAGGAGGGACTGTGGCTGGACAGGGGCACTCGGGTGGTCTTTATCG
AC
TTCTCCGTCTACAATGCCAACATCAATCTTTTCTGTATTCTGAGACTGGTGGTAGAGTTTCCAGCCAC
A
GGAGGGACCATCCCATCCTGGCAGATCCGCACAGTTAAGCTGATCCGCTATGTGAATAACTGGGACTTC
TTC
ATTGTGGGCTGTGAAGTTGTCTTCTGTGTCTTCATCTTCTATTATGTGGTGGAGGAAATCCTGGAAA
TC
CACCTGCATCGGCTTCGCTACCTCAGCAGCGTCTGGAACATTCTGGACCTGGTGGTCATCTTGCTCTC
C
ATCGTGGCTGTGGGTTTCCACATATTCCGAACCCTGGAAGTGAACCGACTGATGGGAAAGCTTCTGCAA
CAG
CCAGACACGTATGCAGACTTTGAGTTCCTGGCCTTCTGGCAGACTCAGTACAATAACATGAACGCGG
TC
AACCTTTTCTTTGCTTGGATCAAGATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTC
C
TCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCT
TAC
GCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATTT
TC
ACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGG
C
CCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGAACATGTTCCTGGCCATCATC
AAC
GACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCC
TG
AAACAGAGCTACAACAAGACCCTACTAAGGCTGCGCCTGAGGAAAGAGCGGGTTTCTGATGTGCAGAA
G
GTCCTGAAGGGTGGGGAACCAGAGATCCAGTTTGAAGATTTCACCAGCACCTTGAGGGAACTGGGGCAC
GAG
GAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGG
AG
CAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGGGTGACCCTCAATGCTGAGATTGAGAACCTAGG
C
CGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCT
GGA
GAAGAATTCGACATGCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCC
AG
ATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAAT
G
GGGGAACCAGCTGTTTGGGAGAACCTGTATAATCCGTCCTAG


Translation (760 aa):
MNSMESPKNQELQTLGNRAWDNPAYSDPPSPNRTLRICTVSSVALPETQPKKPEVRCQEKTQRTLVSSCC
L
HICRSIR
GLWGTTLTENTAENRELYVKTTLRELVVYIVFLVDICLLTYGMTSSSAYYYTKVMSELFLHT
P
SDSGVSFQTISSMSDFWD
FAQGPLLDSLYWTKWYNNQSLGRGSHSFIYYENLLLGAPRLRQLRVRNDSC
V
VHEDFREDILNCYDVYSPDKEDQLPFGPQNGT
AWTYHSQNELGGSSHWGRLTSYSGGGYYLDLPGSRQA
S
AEALQGLQEGLWLDRGTRVVFIDFSVYNANINLFCIL
RLVVEFPATGGTIPSWQIRTVKLIRYVNNWDF
F
IVGCEVVFCVFIFYYVVEEILEIHLHRLRYLSSVWNILDLVVIL
LSIVAVGFHIFRTLEVNRLMGKLLQ
Q
PDTYADFEFLAFWQTQYNNMNAVNLFFAWIK
IFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFA
Y
AQLGYLLFGTQVENFSTFVKC
IFTQFRIILGDFDYNAIDNANRILGPVYFVTYVFFVFFVLLNMFLAII
N
DTYSEVKEELAGQKDQLQLSDFLKQ
SYNKTLLRLRLRKERVSDVQKVLKGGEPEIQFEDFTSTLRELGH
E
EHEITAAFTRFDQDGDHILDEEEQEQMRQGLEEER
VTLNAEIENLGRSVGHSPPGELGAEAARGQSWVS
G
EEFD
MLTRRVLQLQCVLEGVVSQIDAVGSKLKMLERKGELAPSPGMGEPAVWENLYNPS



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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