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Report for CCDS39022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39022.1 Public Mus musculus 5 Fam185a 23 108 98 CCDS HistoryNCBI Gene:330050Re-query CCDS DB by CCDS ID:39022.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39022.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056045.4 ENSMUSP00000058333.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056045.4Link to Ensembl Protein Viewer:ENSMUSP00000058333.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056045Re-query CCDS DB by Protein ID:ENSMUSP00000058333
Original member NCBI NM_177869.4 NP_808537.2 Updated not alive Link to Nucleotide Sequence:NM_177869.4Link to Protein Sequence:NP_808537.2Re-query CCDS DB by Nucleotide ID:NM_177869Re-query CCDS DB by Protein ID:NP_808537
Current member NCBI NM_177869.5 NP_808537.2 Accepted alive Link to Nucleotide Sequence:NM_177869.5Link to Protein Sequence:NP_808537.2Re-query CCDS DB by Nucleotide ID:NM_177869Re-query CCDS DB by Protein ID:NP_808537Link to BLAST:NP_808537.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808537.2 378 Q7TPD2-1 378 100% 0 0

Chromosomal Locations for CCDS 39022.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21425168 21425576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21429724 21429833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21433691 21433783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21438700 21438838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21447316 21447357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21455782 21455877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21459159 21459293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21480332 21480444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGTTCGGCCGCCTCCCTCCTTGCGCGTCCCGAGTGCGGGCGGGCGCCTTGGTCGGAGCTCTCGGGGCTC
GGACTTGCGGCTCCAGTGGGGCGCAGCGGCAGGGATCAGCGCCCGATGACTCTGGGGCCGGCCTGGCGCG
TGGGGCTCTGAGGGAGTGGACGCTGCAGGTGAGCCCGTTTGGGCGACTGAGGGCGCGGCTCCCTTGCCAC
CTGGCCGTGAGGCCCCTGGATCCCCTTGCGCACCCGGATGGCGACCGCGTGCAGGTGGCGGTGTGCGGCG
TGGAGCACGTGGCGCGCGGCCTGGACAGCCTGCAGGTCAAGTATGATGCTGATCGGCAGGAGATGGCCAT
TCTGTCGGACGACATCGACCCCCAGGCGTCGGTGGAGGTGAACGCGCCCGTCAAATTTGATTTGAGTATT
GAGTCATCAGGATCTGGCTCTGTGAAGGTGCAGAATATTGAATGTGATAGCTGTAAAATCGACACTGAGC
AGGGGACCAGCATCCTGCAGTCTGTGAAGAGTCAAAAGTTGCATGTTCAAACCAAAGGAGGCGATGTGAT
CTGTTGTGGAACGGTTTACGGAAATATAGATATTCATGCATCGGATAAAAGTACTGTGAGCATAGAGAAA
CTTCAGGGAAGTTGTGTTAATATATCTACGGAGGATGGTTTGCTTCAAGCCAAGTATCTTTATACAGAAT
CTTCCTTTCTGTCTTCTGCTGCTGGGAATATTGCACTAGGAAATGTTCATGGAAATATCATCTTACAAAG
CAAGATGGGTAACATAACAGTGGATTCGTCCTGTGGATGTCTAAAAGCCTCCAGTCATCAGGGTGCCATA
GATGTGTATGTCAGTCAGCTGGGGGAAGTGGCACTGACAACAGAAGAAGGTTCTATTGCTGTCAAGGCCC
CATCTTCTCTACGAGCTTATTTTAAATTATCAGGCAAAGAGGTAGTTGTGGATGAAGAAGCTCATGTTCA
GGAAATGGCCAAAGACTGTAAAGGTGATGGTGTGACGGTTACAGGACTCATGAATCAAGCAAGCAAACAC
GAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGAGCTGGTTTCAGTCCC
TGAAGCTGCCGGACTGA

Translation (378 aa):
MFGRLPPCASRVRAGALVGALGARTCGSSGAQRQGSAPDDSGAGLARGALREWTLQVSPFGRLRARLPCH
LAVRPLDPLAHPDGDRVQVAVCGVEHVARGLDSLQVKYDADRQEMAILSDDIDPQASVEVNAPVKFDLSI
ESSGSGSVKVQNIECDSCKIDTEQGTSILQSVKSQKLHVQTKGGDVICCGTVYGNIDIHASDKSTVSIEK
LQGSCVNISTEDGLLQAKYLYTESSFLSSAAGNIALGNVHGNIILQSKMGNITVDSSCGCLKASSHQGAI
DVYVSQLGEVALTTEEGSIAVKAPSSLRAYFKLSGKEVVVDEEAHVQEMAKDCKGDGVTVTGLMNQASKH
ERWINAIAPKGTVSFQHQSWFQSLKLPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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