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Report for CCDS30416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30416.1 Public Mus musculus X Tceal5 23 108 98 CCDS HistoryNCBI Gene:331532Re-query CCDS DB by CCDS ID:30416.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066819.10 ENSMUSP00000065397.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066819.10Link to Ensembl Protein Viewer:ENSMUSP00000065397.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000066819Re-query CCDS DB by Protein ID:ENSMUSP00000065397
Original member Current member NCBI NM_001365117.1 NP_001352046.1 Accepted alive Link to Nucleotide Sequence:NM_001365117.1Link to Protein Sequence:NP_001352046.1Re-query CCDS DB by Nucleotide ID:NM_001365117Re-query CCDS DB by Protein ID:NP_001352046Link to BLAST:NP_001352046.1
Original member Current member NCBI NM_001365118.1 NP_001352047.1 Accepted alive Link to Nucleotide Sequence:NM_001365118.1Link to Protein Sequence:NP_001352047.1Re-query CCDS DB by Nucleotide ID:NM_001365118Re-query CCDS DB by Protein ID:NP_001352047Link to BLAST:NP_001352047.1
Original member Current member NCBI NM_177919.3 NP_808587.1 Accepted alive Link to Nucleotide Sequence:NM_177919.3Link to Protein Sequence:NP_808587.1Re-query CCDS DB by Nucleotide ID:NM_177919Re-query CCDS DB by Protein ID:NP_808587Link to BLAST:NP_808587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352046.1 200 Q8CCT4 200 100% 0 0
NP_001352047.1 200 Q8CCT4 200 100% 0 0
NP_808587.1 200 Q8CCT4 200 100% 0 0

Chromosomal Locations for CCDS 30416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136201185 136201787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGAAAAGTTCTACAAAGAAAATGAAGGAAAGCCAGAAAACAAGGGAAGGGCAGAAGACGAAGGAAGTA
CAGAAGAGGGAGGAAAAGCAGATGAAGACAAGTCAGATGCAGAGGGGAAGCCAGCACGCCAGGGCAAGCT
AGAGGTGGAGGGAGGGCCAGGTGAGCAGGCACAGCAGAAAGGTGAGGGGAAGCCCGAGAAGCAGGGAAAG
TCTGACGGGGAGGGCAAGCGCCAAGGGGAGAGCAAGCCCGATTCCCAGGCAAAGTCAGCCAGCGAGGCGC
GGGCTGCAGAAAAGCGCCCTGCTGAAGATTATGTGCCCCGGAAAGCAAAACGAAAAACAGATAGGGGGAC
AGATGATTCTCCCAAGAACTCCCAGGAGGACTTACAGGACAGGCATGTAAGCAGCGAGGAGATGATGAGA
GAGTGCGCAGATATGACTAGGGCTCAGGAAGAGCTGAGGAAGAGGCAGAAAATGGGTGGTTTTCACTGGG
TGCCAAGAGATGCACAGGATGCTTTAGTCCCCAGGGGCCAGCGGGGAGTCAGGGGGGTGAGGGGCGGCGG
AGGCAGGGGCCAGAAGGACTTAGAAGATGCTCCATTTGTTTAA

Translation (200 aa):
MEKFYKENEGKPENKGRAEDEGSTEEGGKADEDKSDAEGKPARQGKLEVEGGPGEQAQQKGEGKPEKQGK
SDGEGKRQGESKPDSQAKSASEARAAEKRPAEDYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMR
ECADMTRAQEELRKRQKMGGFHWVPRDAQDALVPRGQRGVRGVRGGGGRGQKDLEDAPFV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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