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Report for CCDS22330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22330.1 Public Mus musculus 8 Trim75 23 108 98 CCDS HistoryNCBI Gene:333307Re-query CCDS DB by CCDS ID:22330.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095295.2 ENSMUSP00000092932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095295.2Link to Ensembl Protein Viewer:ENSMUSP00000092932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095295Re-query CCDS DB by Protein ID:ENSMUSP00000092932
Original member Current member NCBI NM_001033429.2 NP_001028601.1 Accepted alive Link to Nucleotide Sequence:NM_001033429.2Link to Protein Sequence:NP_001028601.1Re-query CCDS DB by Nucleotide ID:NM_001033429Re-query CCDS DB by Protein ID:NP_001028601Link to BLAST:NP_001028601.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028601.1 467 Q3UWZ0 467 100% 0 0

Chromosomal Locations for CCDS 22330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 64982393 64983796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCACATGTCGAGGTCTTGGCCAGACTCCAGAAAGAGACCAAGTGCCCCATCTGTTTGGACGATCTGA
CAGATCCCGTCACCGTCGAGTGCGGACACAACTTCTGTCGTTCCTGCATCAAAGACTTCTGGGCAGGGCA
GCAAGCCACGTCCTCCTGTCCTGTCTGCCGACACCAGTGCCAACACAGGAACCTCAGAAGCAATGCCCAG
CTGGGAAACATGATTGAAACTGCCCAGCTGCTCCAAGGCATGGAGAACAAGAGGCACGAGAGCAGCACCA
GTTGCGAGAGGCACAACCAGGCCCTGACCCTCTTCTGTGAGGATGACCTGCAGTTGCTCTGTGACCAGTG
CGTGGAGCCTGAGAGCCACGGGCGCCACCAGGTGCTGTCCATTACAGAGGCTGCCTCTCTCCACAGGAAA
CACCTTCAGGACTATAGCAAGCTCCTGAAGTGGGAAGTGAAAGAGATTCAAGGGCTAATGAGCGCACTAA
ACAAAAGAACCGTGACCCTGAGGGAGCAAGCAGAGGCACAGAGGTCACAGCTAACCTCTGAGTGTGAGAA
GCTCATGCGGTTTCTAGACCAGGAAGAGCGGGCAGCTTTCTCCAGGTTAGAAGACGAGGAGATGAGGCTC
GAGAAGAGACTGCTTGATAACATAGCAGCATTAGAACACCACGGTTCCAGCCTCAGAGACCTCCTGAGAC
ACTTGATGCTGACCGGAGAGCTCTCCGAAGCCAAGATGTTGTCCACGGTCAAGGATTTTTACCTGAATTG
TAGGCGTCAGCTCATCAGCCCAAGCATTTTCCCAGTTCAGTTGAGAAGAGTGGAGTACAGCTTTCCTCTC
CAGTATTCGGCCCTACAGAAAGTTATACAGCATTTTACAGACAACGTCACTCTAGACCTGAAGACAGCCC
ATCCAAACCTGCTCATTTCTAAGGATAGAACCTGCGTAACATTTACAAAGAAAAGACAACGTATTCCTGG
TTCTTCAAGTTTTACCAAGAGCCCTGTTGTGTTGGGGATTCCACATTTTAATTCTGGGAGACACTTCTGG
GAGGTGCAGGTAGGAAAGAAGCCAAAGTGGGCTATTGGCATTTGCAAAGCTGATTCCTCTATCGGGGAAA
GGCAGTCCCCTAACCCCTGGGGGTACTGGAGGATTGTTTGGCAGGGGGACAGCTTCAACGTCTCAGGAGC
TGATCCAGACTCTCGGCTGAAGGCCGCAAGAGCTACAAGCATTGGTGTTTTCCTGGACTATGAACTGGGA
GAGGTTTCTTTCTATGGCATGCCTGAGAAATGTCACCTCTATACTTTCAGGGACACTTTTTCTGGTCCTG
TCTGCCCTTATTTCTACATAGGGCCTCAGTCAGAACCTCTTAGACTCTGTTCTGCCACTGATTCAGAATG
CTAA

Translation (467 aa):
MAHVEVLARLQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQATSSCPVCRHQCQHRNLRSNAQ
LGNMIETAQLLQGMENKRHESSTSCERHNQALTLFCEDDLQLLCDQCVEPESHGRHQVLSITEAASLHRK
HLQDYSKLLKWEVKEIQGLMSALNKRTVTLREQAEAQRSQLTSECEKLMRFLDQEERAAFSRLEDEEMRL
EKRLLDNIAALEHHGSSLRDLLRHLMLTGELSEAKMLSTVKDFYLNCRRQLISPSIFPVQLRRVEYSFPL
QYSALQKVIQHFTDNVTLDLKTAHPNLLISKDRTCVTFTKKRQRIPGSSSFTKSPVVLGIPHFNSGRHFW
EVQVGKKPKWAIGICKADSSIGERQSPNPWGYWRIVWQGDSFNVSGADPDSRLKAARATSIGVFLDYELG
EVSFYGMPEKCHLYTFRDTFSGPVCPYFYIGPQSEPLRLCSATDSEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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