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Report for CCDS29330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29330.1 Public Mus musculus 18 Ccdc68 23 108 98 CCDS HistoryNCBI Gene:381175Re-query CCDS DB by CCDS ID:29330.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043929.10 ENSMUSP00000046197.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043929.10Link to Ensembl Protein Viewer:ENSMUSP00000046197.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043929Re-query CCDS DB by Protein ID:ENSMUSP00000046197
Original member Current member NCBI NM_201362.2 NP_958750.1 Accepted alive Link to Nucleotide Sequence:NM_201362.2Link to Protein Sequence:NP_958750.1Re-query CCDS DB by Nucleotide ID:NM_201362Re-query CCDS DB by Protein ID:NP_958750Link to BLAST:NP_958750.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958750.1 333 Q8BVC4-1 333 100% 0 0

Chromosomal Locations for CCDS 29330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 69938854 69938970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69940100 69940186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69943728 69943862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69946424 69946549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69947051 69947179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69955982 69956064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69960401 69960506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69961460 69961543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69966790 69966866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 69968978 69969035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGACAACTGTAACAGTGACCACAGAAGTTCCCTCAAGCGGTAAGACAGAAGACGGCCACGTCTTCTGTG
ACTCTTCGTCTGCTCACATTATTGAAGAAACCGAGTATGTGAGACAGATGCGAACTACACTGGAAAAGAT
CCGAAATCACATGTTTAAGGAAAAAGAAGGCTGTGGCAATGCAAGGCACAAACTAGATGCAGAGGGATCT
GGAAATATTCAGAATGGCTCAGACTCCACCACAGACCCCACCTGTCTGGATTTGCTCATGGAAAACATGA
GAAGAAAAGATCAGCAGCTCCTGGAAATGAACAGAGAGAATGAAGTGTTGCAAATCAAGCTGGAAGCTTC
CAGAGAAGCAGGAGCAGCAGCTTTGAGAAATGTGGCTCAGAGATTATTTGACAACTACCAAACACAAGCT
GGAGACCTGGAGAAAAAGCACGAGGGCAGGAAACATCTCCTTCAGGTCAACAACCTTGAGAAAGAGCAGG
CATTAAAGGGAAGCGCCGAAAGTCTGAATCTACTTTCAGAAAAACTGGAGGAAAAACATGGGCAAATCGT
AGGGCTGGAAAACCGTGTACAGAGGATGGAAAACGAAAAGAAAACGCTCTTAGAGAAAAAATTGCGTTTA
GAAAGCAAACTGTTCCAGCTTAAATCCAACGCTGCAAATCCAAAAAGTTGCCAGGATCTTCAAACGGAGA
TTTCCATCCTCCAGGAGCAGATCTCCCATTTGCAGTTCGTGATCCACTCCCAGCACCAGAACCTTCGCAG
CATCATCCAGGAGATGGAAGGACTAAAAAATACTTTAAAGGAGCAAGATACAAAAATTGAAAATTTGAAA
GAAAAGGTCACTGTGCTTGAAGCCCAGAATAAAGAACTCAAAACCAGGGTGGCACATTGGACTGAAACAC
CTAGGACCTTGGTATCTAAGGCCGTCTCCACAAGCGAGTTGAAGACTGAAGGTGCTTCTCCATATTTGAT
GTTAATTCGGCTACGAAAATGA

Translation (333 aa):
MTTVTVTTEVPSSGKTEDGHVFCDSSSAHIIEETEYVRQMRTTLEKIRNHMFKEKEGCGNARHKLDAEGS
GNIQNGSDSTTDPTCLDLLMENMRRKDQQLLEMNRENEVLQIKLEASREAGAAALRNVAQRLFDNYQTQA
GDLEKKHEGRKHLLQVNNLEKEQALKGSAESLNLLSEKLEEKHGQIVGLENRVQRMENEKKTLLEKKLRL
ESKLFQLKSNAANPKSCQDLQTEISILQEQISHLQFVIHSQHQNLRSIIQEMEGLKNTLKEQDTKIENLK
EKVTVLEAQNKELKTRVAHWTETPRTLVSKAVSTSELKTEGASPYLMLIRLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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