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Report for CCDS37948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37948.1 Public Mus musculus 19 Spata6l 23 108 98 CCDS HistoryNCBI Gene:381218Re-query CCDS DB by CCDS ID:37948.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025872.12 ENSMUSP00000025872.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025872.12Link to Ensembl Protein Viewer:ENSMUSP00000025872.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025872Re-query CCDS DB by Protein ID:ENSMUSP00000025872
Original member Current member NCBI NM_198651.2 NP_941053.2 Accepted alive Link to Nucleotide Sequence:NM_198651.2Link to Protein Sequence:NP_941053.2Re-query CCDS DB by Nucleotide ID:NM_198651Re-query CCDS DB by Protein ID:NP_941053Link to BLAST:NP_941053.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941053.2 347 B2RV46 347 100% 0 0

Chromosomal Locations for CCDS 37948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 28927661 28927750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28928548 28928632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28938232 28938419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28939135 28939169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28941712 28941814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28944224 28944454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28945751 28945831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28948619 28948743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28954090 28954131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28959680 28959728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 28963536 28963550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGAGATTTGTAAAGGTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAAGCTTCC
TAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAGCATGGGAAGAGTTGGCCTACTATGAAAAAAACAC
CCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATG
AAGACAGCTATTTGGTTTCCAGGCATTGCTCCCAAAATAGAGTTTTCTACAAGGACAGCCATCCTAGAAT
GTGTGTTCCCGTGTAAAAACAGATTCATTTGTGAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATC
TCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCC
AAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATG
GGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACATGTGGACAGTGGGAACCC
ATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGAT
CTTTCGAAGAAAAGAGCATCTTCTCTTGACAGCCTGGAGGCGAACATAAAGGTTATCCGAGAGCCAGATG
AGCGGATTGTCTTAAAGAGCCAGCCACCACCACCTGTAGATTCAAGTGAGTCCAGAAAGCCCTCGCTCAG
TCACCAAGGAGATGCCAGTTTGCACACAGAAACTTCAGTTACCACCTCACAACTCTCCAGACCTCCCAGC
CCTCTGAATCAACCTCTTCTCCAAGAAAGGTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCG
AGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAGGACAGCTTTATCTCTGAAACAAATTC
TATCCATGAAAGACCAAGCTACCCTCTGAAGAAACACTTACTGCGTGCACAGAGATATTTTTAA

Translation (347 aa):
MRFVKVFEEAIDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTRDFLFPEPRLASSHLGMQREVLM
KTAIWFPGIAPKIEFSTRTAILECVFPCKNRFICEERCRLERSVSKSHGQRVQATNRKKKPKEKDSDQLP
KGTQSRLPSPQRLHLHRPTQRNHGKSFKFPGERKPPFVVRHVDSGNPFGENNLEHCSKKSRRKPKLINFD
LSKKRASSLDSLEANIKVIREPDERIVLKSQPPPPVDSSESRKPSLSHQGDASLHTETSVTTSQLSRPPS
PLNQPLLQERFQPFSQSTWQKIPEGVRSLLTSHRAHPKDSFISETNSIHERPSYPLKKHLLRAQRYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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