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Report for CCDS15615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15615.1 Public Mus musculus 1 Batf3 23 108 98 CCDS HistoryNCBI Gene:381319Re-query CCDS DB by CCDS ID:15615.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027943.5 ENSMUSP00000027943.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027943.5Link to Ensembl Protein Viewer:ENSMUSP00000027943.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027943Re-query CCDS DB by Protein ID:ENSMUSP00000027943
Original member Current member NCBI NM_030060.2 NP_084336.1 Accepted alive Link to Nucleotide Sequence:NM_030060.2Link to Protein Sequence:NP_084336.1Re-query CCDS DB by Nucleotide ID:NM_030060Re-query CCDS DB by Protein ID:NP_084336Link to BLAST:NP_084336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084336.1 118 Q9D275 118 100% 0 0

Chromosomal Locations for CCDS 15615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191098459 191098527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191100728 191100832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191108451 191108633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTCGCAAGGGCCCCCCGCGGTCAGCGTGCTGCAGAGAAGCGTGGATGCGCCCGGGAACCAGCCGCAGA
GC
CCCAAGGACGATGACAGGAAAGTTCGAAGGAGAGAGAAAAACCGGGTTGCAGCTCAGAGGAGCCGGAA
G
AAGCAGACCCAGAAGGCTGACAAGCTCCACGAGGAGCACGAGAGCCTGGAGCAGGAGAACTCTGTGCTG
CGC
AGGGAGATTTCGAAGCTGAAGGAGGAGCTGCGTCACCTGAGCGAGGTGCTGAAGGAGCACGAGAAGA
TG
TGCCCGCTGCTGCTGTGTCCTATGAACTTTGTGCAGCTTCGGTCAGACCCCGTGGCCAGCTGTCTACC
A
CGATGA


Translation (118 aa):
MSQGPPAVSVLQRSVDAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKADKLHEEHESLEQENSVL
R
REISKLKEELRHLSEVLKEHEKMCPLLLCPMNFVQLRSDPVASCLPR




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser