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Report for CCDS18235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18235.1 Public Mus musculus 4 Mup21 23 108 98 CCDS HistoryNCBI Gene:381531Re-query CCDS DB by CCDS ID:18235.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077719.3 ENSMUSP00000076899.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077719.3Link to Ensembl Protein Viewer:ENSMUSP00000076899.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077719Re-query CCDS DB by Protein ID:ENSMUSP00000076899
Original member Current member NCBI NM_001009550.2 NP_001009550.1 Accepted alive Link to Nucleotide Sequence:NM_001009550.2Link to Protein Sequence:NP_001009550.1Re-query CCDS DB by Nucleotide ID:NM_001009550Re-query CCDS DB by Protein ID:NP_001009550Link to BLAST:NP_001009550.1

Chromosomal Locations for CCDS 18235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 62147952 62147977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62148142 62148243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62148584 62148694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62149354 62149427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62150195 62150328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 62150654 62150752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGAAGCTGTTGCTGCTGCTGCTGTGTTTGGGACTGACTATAGTCTGTATCCAGGCAGAAGAATATAGTT
CT
ATGGGAAGGAACTTTAATGTAGAACAGATTAGCGGGTATTGGTTTTCTATTGCTGAAGCCTCTGATGA
A
AGAGAAAAGATAGAAGAACATGGCAGCATGAGAGCTTTTGTGGAAAACATCACTGTCTTGGAGAATTCC
TTA
GTCTTTAAATTCCATTTTATTGTAAATGAAGAGTGCACCGAAATGACTTTGATTGGTGAAGAAACAG
AA
AAGGCTGGCATATATTATTTGAACTATGATGGATTCAATACATTTACTATACTTAAGACAGACTATGA
T
AATTATATTATGATTTATCTCATTAACGAAAAAGATGGGGAAACCTTCCAGCTGATGGAGCTCTATGGC
CGA
GAACCATATTTGAGTTTAGACATCAAGGAAAAGTTTGCAAAACTATGCGAGGAGCATGGAATCATTA
GA
GAAAATATCATTGACCTAACCAACGTCAATCGCTGCCTCGAGGCCCGAGAATGA


Translation (181 aa):
MKLLLLLLCLGLTIVCIQAEEYSSMGRNFNVEQISGYWFSIAEASDEREKIEEHGSMRAFVENITVLENS
L
VFKFHF
IVNEECTEMTLIGEETEKAGIYYLNYDGFNTFTILKTDYDNYIMIYLINEKDGETFQLMELYG
R
EPYLSLDIKEKFAKLCEEHGIIRENIIDLTNV
NRCLEARE



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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