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Report for CCDS38172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38172.1 Public Mus musculus 2 Or8k35 23 108 98 CCDS HistoryNCBI Gene:404473Re-query CCDS DB by CCDS ID:38172.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000215600.1 ENSMUSP00000150706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215600.1Link to Ensembl Protein Viewer:ENSMUSP00000150706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215600Re-query CCDS DB by Protein ID:ENSMUSP00000150706
Original member Current member NCBI NM_207674.2 NP_997557.2 Accepted alive Link to Nucleotide Sequence:NM_207674.2Link to Protein Sequence:NP_997557.2Re-query CCDS DB by Nucleotide ID:NM_207674Re-query CCDS DB by Protein ID:NP_997557Link to BLAST:NP_997557.2

Chromosomal Locations for CCDS 38172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86593885 86594826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGATAAACACAACCTAACAGTTGTGACTGAATTCATCCTGATGGGAATCACTGAGAACCCTGAGCTGC
AGGCTCCATTGTTTGGGTTGTTCCTAGTCATCTACCTGACCTCAGTGATTGGCAATCTTGGGATAATCAT
CCTCACCAATGTAGACGCCAAGCTACAGACGCCAATGTATTTCTTTCTTAGGCATTTGGCTTTTACTGAC
TTTGTTTATTCGACAACTGTGGGACCAAAAATGTTGGTAAACTTTGTTGTAGATCAAAATGCAATTTCCT
ACTCTCTTTGTGCTACACAGCTAGCTTTTTTTCTTCTGTTCATTGGCAGTGAGCTTTTTATTTTGTCTGC
AATGTCCTATGACCGCTATGTGGCCATATGTAAGCCTCTGCTCTACACTGTCATCATGTCACATAAAGTA
TGTTGGGTTCTAGTCACAATGACCTATCTTTACTATACATTTATGTCACTTGTAGTCACCATAAATATTT
TCTCTTTATCCTTCTGTGGCTACAATGTCATCAACCATTTCTTTTGTGATTGTATCCCCTTAATATCGTT
GCTTTGCTCAAATACACAAAAAGTTGAACTTATAGTTATGATCTTTGCAGGTTTTGATTTGATTTCTTCC
CTTGTCGTTGTGCTTATGTCCTACCTGCTCATTCTCATAGCTGTTCTCAGGATGAACTCTGCTGAGGGCA
GACGCAAAGCTTTCTCTACCTGTGGGTCCCACCTGACAGTGGTTACAATATTCTATGGGACACTGATATT
TATGTATGTAAAACCTGTATCTAGCCATTCAATTGATACTGATAAAATATCATCTATACTTTATACTCTA
ATCATCCCCTTATTGAATCCCCTGATCTACAGTCTGAGGAACAAAGATGTAAAAGATGCTCTACAAAGAA
CATGGCAAAAAATATTCAACACATTTCCTTAA

Translation (313 aa):
MDKHNLTVVTEFILMGITENPELQAPLFGLFLVIYLTSVIGNLGIIILTNVDAKLQTPMYFFLRHLAFTD
FVYSTTVGPKMLVNFVVDQNAISYSLCATQLAFFLLFIGSELFILSAMSYDRYVAICKPLLYTVIMSHKV
CWVLVTMTYLYYTFMSLVVTINIFSLSFCGYNVINHFFCDCIPLISLLCSNTQKVELIVMIFAGFDLISS
LVVVLMSYLLILIAVLRMNSAEGRRKAFSTCGSHLTVVTIFYGTLIFMYVKPVSSHSIDTDKISSILYTL
IIPLLNPLIYSLRNKDVKDALQRTWQKIFNTFP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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