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Report for CCDS4030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4030.1 Public Homo sapiens 5 POLK 24 110 108 CCDS HistoryNCBI Gene:51426Re-query CCDS DB by CCDS ID:4030.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000241436.8 ENSP00000241436.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000241436.8Link to Ensembl Protein Viewer:ENSP00000241436.4Re-query CCDS DB by Nucleotide ID:ENST00000241436Re-query CCDS DB by Protein ID:ENSP00000241436
Original member Current member NCBI NM_001387113.3 NP_001374042.1 Accepted alive Link to Nucleotide Sequence:NM_001387113.3Link to Protein Sequence:NP_001374042.1Re-query CCDS DB by Nucleotide ID:NM_001387113Re-query CCDS DB by Protein ID:NP_001374042Link to BLAST:NP_001374042.1
Original member Current member NCBI NM_016218.6 NP_057302.1 Accepted alive Link to Nucleotide Sequence:NM_016218.6Link to Protein Sequence:NP_057302.1Re-query CCDS DB by Nucleotide ID:NM_016218Re-query CCDS DB by Protein ID:NP_057302Link to BLAST:NP_057302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374042.1 870 Q9UBT6-1 870 100% 0 0
NP_057302.1 870 Q9UBT6-1 870 100% 0 0

Chromosomal Locations for CCDS 4030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75547023 75547157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75552472 75552591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75569340 75569492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75573738 75573869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75576780 75576933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75581209 75581448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75583293 75583417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75584760 75584926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75587026 75587058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75590344 75590440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75593878 75594049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75596222 75597178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75597747 75597789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75597934 75598018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGATAGCACAAAGGAGAAGTGTGACAGTTACAAAGATGATCTTCTGCTTAGGATGGGACTTAATGATA
ATAAAGCAGGAATGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATGGAAGCCACGAAGGGGTC
CAGATTTTATGGAAATGAGCTCAAGAAAGAAAAGCAAGTCAACCAACGAATTGAAAATATGATGCAACAA
AAAGCTCAAATCACCAGCCAACAGCTAAGAAAAGCACAATTACAGGTTGACAGATTTGCAATGGAATTAG
AACAAAGCCGAAATTTGAGCAATACCATAGTGCACATTGACATGGATGCTTTCTATGCAGCTGTAGAAAT
GAGGGACAATCCAGAATTGAAGGATAAACCCATTGCTGTAGGATCAATGAGTATGCTGTCTACTTCAAAT
TACCATGCAAGGAGATTTGGTGTTCGTGCAGCCATGCCAGGATTTATTGCTAAGAGGCTGTGCCCACAAC
TTATAATAGTGCCCCCCAACTTTGACAAATACCGAGCTGTGAGTAAAGAGGTTAAGGAAATACTTGCTGA
TTATGATCCCAATTTTATGGCCATGAGTCTTGATGAAGCCTACTTGAATATAACAAAGCACTTAGAAGAA
AGACAAAATTGGCCTGAGGATAAAAGAAGGTATTTCATCAAAATGGGAAGCTCTGTAGAAAATGATAATC
CAGGAAAGGAAGTTAATAAACTGAGTGAGCATGAACGATCCATCTCTCCACTACTTTTTGAAGAGAGTCC
TTCTGATGTGCAGCCCCCAGGAGATCCTTTCCAAGTGAACTTTGAAGAACAAAACAATCCTCAAATACTC
CAAAACTCAGTTGTTTTTGGAACATCAGCCCAGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAGA
AAACAACACTGACAGCCAGTGCAGGCATTGCCCCAAATACAATGTTAGCAAAAGTATGCAGTGATAAGAA
TAAACCAAATGGACAATACCAAATTCTTCCCAATAGACAAGCTGTGATGGACTTCATCAAGGATTTACCC
ATTAGAAAGGTTTCTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTTGGAATTATTACATGTA
CAGAACTTTACCAACAGAGGGCATTGCTTTCTCTCCTTTTCTCTGAAACATCTTGGCATTATTTCCTTCA
TATCTCCTTGGGTCTAGGTTCAACACACCTGACGAGGGATGGAGAGAGGAAAAGTATGAGCGTTGAGAGG
ACATTCAGTGAGATAAATAAAGCGGAAGAGCAATACAGCCTATGTCAAGAACTTTGCAGTGAGCTTGCTC
AGGATCTACAGAAAGAAAGACTTAAGGGTAGAACTGTTACCATTAAGTTGAAGAATGTGAATTTTGAAGT
AAAAACTCGTGCATCTACAGTTTCATCTGTTGTTTCTACTGCAGAAGAAATATTTGCCATTGCTAAGGAA
TTGCTAAAAACAGAAATTGATGCTGATTTTCCACATCCCTTGAGATTAAGGCTTATGGGTGTTCGGATAT
CTAGTTTTCCCAATGAAGAGGACAGGAAACACCAACAAAGGAGCATTATTGGCTTTTTACAGGCTGGAAA
CCAAGCCCTGTCAGCCACTGAGTGTACATTAGAGAAAACTGACAAAGATAAGTTTGTAAAACCTCTAGAA
ATGTCTCATAAGAAGAGTTTCTTTGATAAAAAACGATCAGAAAGGAAATGGAGTCACCAAGATACATTTA
AATGTGAAGCCGTGAATAAACAAAGTTTCCAGACATCACAACCATTCCAAGTTTTAAAGAAGAAGATGAA
TGAGAATTTGGAAATATCAGAGAATTCAGATGACTGTCAGATACTTACCTGTCCTGTTTGCTTTAGGGCT
CAAGGGTGCATCAGTCTGGAAGCCTTGAATAAACATGTAGATGAATGTCTTGATGGACCTTCAATCAGTG
AAAACTTTAAAATGTTCTCGTGTTCACATGTTTCTGCTACCAAAGTTAACAAGAAAGAAAATGTTCCTGC
TTCTTCACTTTGTGAGAAGCAAGATTATGAAGCCCATCCAAAAATTAAAGAAATATCTTCAGTAGATTGT
ATAGCTTTAGTAGATACTATAGATAACTCATCTAAAGCAGAAAGCATAGATGCTTTAAGTAATAAGCATA
GCAAGGAAGAATGTTCTAGTCTCCCAAGCAAGTCTTTTAATATTGAACACTGTCATCAGAATTCTTCTTC
TACTGTTTCATTGGAAAACGAAGATGTTGGATCATTTAGACAAGAATACCGCCAGCCTTACTTATGTGAA
GTGAAAACAGGCCAAGCTCTAGTTTGTCCTGTTTGTAACGTAGAACAAAAGACTTCAGATCTAACCCTGT
TCAATGTGCATGTGGATGTTTGCTTAAATAAAAGTTTTATCCAAGAATTAAGAAAGGATAAATTTAACCC
AGTTAATCAACCCAAAGAAAGCTCCAGAAGTACTGGTAGCTCAAGTGGAGTACAGAAGGCTGTAACAAGA
ACAAAAAGGCCAGGATTGATGACAAAGTACTCAACATCAAAGAAAATAAAACCAAACAATCCCAAACATA
CCCTTGATATATTTTTTAAGTAA

Translation (870 aa):
MDSTKEKCDSYKDDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQ
KAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSN
YHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE
RQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQIL
QNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLP
IRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVER
TFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKE
LLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKHQQRSIIGFLQAGNQALSATECTLEKTDKDKFVKPLE
MSHKKSFFDKKRSERKWSHQDTFKCEAVNKQSFQTSQPFQVLKKKMNENLEISENSDDCQILTCPVCFRA
QGCISLEALNKHVDECLDGPSISENFKMFSCSHVSATKVNKKENVPASSLCEKQDYEAHPKIKEISSVDC
IALVDTIDNSSKAESIDALSNKHSKEECSSLPSKSFNIEHCHQNSSSTVSLENEDVGSFRQEYRQPYLCE
VKTGQALVCPVCNVEQKTSDLTLFNVHVDVCLNKSFIQELRKDKFNPVNQPKESSRSTGSSSGVQKAVTR
TKRPGLMTKYSTSKKIKPNNPKHTLDIFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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