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Report for CCDS14658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14658.1 Public Homo sapiens X VGLL1 24 110 108 CCDS HistoryNCBI Gene:51442Re-query CCDS DB by CCDS ID:14658.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14658.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370634.8 ENSP00000359668.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370634.8Link to Ensembl Protein Viewer:ENSP00000359668.3Re-query CCDS DB by Nucleotide ID:ENST00000370634Re-query CCDS DB by Protein ID:ENSP00000359668
Original member Current member NCBI NM_016267.4 NP_057351.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016267.4Link to Protein Sequence:NP_057351.1Re-query CCDS DB by Nucleotide ID:NM_016267Re-query CCDS DB by Protein ID:NP_057351Link to BLAST:NP_057351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057351.1 258 Q99990 258 100% 0 0

Chromosomal Locations for CCDS 14658.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136536021 136536234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136548589 136549008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136550768 136550821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136556451 136556539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGAAGAAATGAAGAAGACTGCCATCCGGCTGCCCAAAGGCAAACAGAAGCCTATAAAGACGGAATGGA
ATTCCCGGTGTGTCCTTTTCACCTACTTCCAAGGGGACATCAGCAGCGTAGTGGATGAACACTTCTCCAG
AGCTCTGAGCAATATCAAGAGCCCCCAGGAATTGACCCCCTCGAGTCAGAGTGAAGGTGTGATGCTGAAA
AACGATGATAGCATGTCTCCAAATCAGTGGCGTTACTCGTCTCCATGGACAAAGCCACAACCAGAAGTAC
CTGTCACAAACCGTGCCGCCAACTGCAACTTGCATGTGCCTGGTCCCATGGCTGTGAATCAGTTCTCACC
GTCCCTGGCTAGGAGGGCCTCTGTTCGGCCTGGGGAGCTGTGGCATTTCTCCTCCCTGGCGGGCACCAGC
TCCTTAGAGCCTGGCTACTCTCATCCCTTCCCCGCTCGGCACCTGGTTCCAGAGCCCCAGCCTGATGGGA
AACGTGAGCCTCTCCTAAGTCTCCTCCAGCAAGACAGATGCCTAGCCCGTCCTCAGGAATCTGCCGCCAG
GGAGAATGGCAACCCTGGCCAGATAGCTGGAAGCACAGGGTTGCTCTTCAACCTGCCTCCCGGCTCAGTT
CACTATAAGAAACTATATGTATCTCGTGGATCTGCCAGTACCAGCCTTCCAAATGAAACTCTTTCAGAGT
TAGAGACACCTGGGAAATACTCACTTACACCACCAAACCACTGGGGCCACCCACATCGATACCTGCAGCA
TCTTTAG

Translation (258 aa):
MEEMKKTAIRLPKGKQKPIKTEWNSRCVLFTYFQGDISSVVDEHFSRALSNIKSPQELTPSSQSEGVMLK
NDDSMSPNQWRYSSPWTKPQPEVPVTNRAANCNLHVPGPMAVNQFSPSLARRASVRPGELWHFSSLAGTS
SLEPGYSHPFPARHLVPEPQPDGKREPLLSLLQQDRCLARPQESAARENGNPGQIAGSTGLLFNLPPGSV
HYKKLYVSRGSASTSLPNETLSELETPGKYSLTPPNHWGHPHRYLQHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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