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Report for CCDS27942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27942.1 Public Mus musculus 16 Carhsp1 23 108 98 CCDS HistoryNCBI Gene:52502Re-query CCDS DB by CCDS ID:27942.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008537.9 ENSMUSP00000008537.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008537.9Link to Ensembl Protein Viewer:ENSMUSP00000008537.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000008537Re-query CCDS DB by Protein ID:ENSMUSP00000008537
Original member Current member NCBI NM_025821.2 NP_080097.1 Accepted alive Link to Nucleotide Sequence:NM_025821.2Link to Protein Sequence:NP_080097.1Re-query CCDS DB by Nucleotide ID:NM_025821Re-query CCDS DB by Protein ID:NP_080097Link to BLAST:NP_080097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080097.1 148 Q9CR86 148 100% 0 0

Chromosomal Locations for CCDS 27942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8660941 8661103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8663587 8663709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8664255 8664415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGTCATCTGAGCCTCCTCCACCGCCGCTGCAGCCCCCCACGCATCAGACTTCTGTAGGGCTATTGGATA
CCCCTCGCACCCGGGATCGCTCTCCATCCCCCCTGCGGGGCAATGTGGTCCCTAGCCCTCTGCCTACCCG
CCGGACAAGGACCTTCTCAGCGACAGTGCGGGCTTCGCAGGGCCCCGTCTACAAAGGAGTCTGTAAATGC
TTCTGCCGGTCCAAGGGCCACGGCTTCATCACCCCAGCTGATGGTGGTCCTGACATCTTCCTGCACATCT
CTGATGTGGAAGGGGAGTATGTTCCGGTGGAAGGCGACGAAGTCACCTATAAGATGTGCTCTATCCCACC
CAAGAACGAGAAGCTGCAGGCTGTAGAGGTGGTCATCACCCACCTGGCACCAGGGACCAAGCATGAGACC
TGGTCTGGGCACGTCATCAGCAACTAG

Translation (148 aa):
MSSEPPPPPLQPPTHQTSVGLLDTPRTRDRSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPVYKGVCKC
FCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTKHET
WSGHVISN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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