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Report for CCDS16784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16784.1 Public Mus musculus 2 Tmx4 23 108 98 CCDS HistoryNCBI Gene:52837Re-query CCDS DB by CCDS ID:16784.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038228.10 ENSMUSP00000045154.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038228.10Link to Ensembl Protein Viewer:ENSMUSP00000045154.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038228Re-query CCDS DB by Protein ID:ENSMUSP00000045154
Original member Current member NCBI NM_029148.1 NP_083424.1 Accepted alive Link to Nucleotide Sequence:NM_029148.1Link to Protein Sequence:NP_083424.1Re-query CCDS DB by Nucleotide ID:NM_029148Re-query CCDS DB by Protein ID:NP_083424Link to BLAST:NP_083424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083424.1 335 Q8C0L0 335 100% 0 0

Chromosomal Locations for CCDS 16784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 134598525 134598865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134600010 134600073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134600888 134600989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134609531 134609576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134620555 134620683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134621388 134621433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134639722 134639837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134643842 134644005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGACAGGCGGCTTCTGCGTCCCGGTACTCCTGGCCGCCTGGCTCGCAGCGGCAGCGGCCGAGGGTCTCG
AGCAGGCCGCGCTGCCGGCCGAGGAGAGCCGTGTGCAGCCCATGACCGCCTCCAACTGGACGCTGGTGAT
GGAGGGCGAGTGGATGCTGAAATTTTATGCTCCATGGTGTCCATCCTGCCAGCAGACTGATTCTGAATGG
GAGACTTTTGCAAAGAATGGAGAAACACTTCAGATCAGTGTGGGAAAGGTGGATGTCATTCAAGAGCCAG
GTTTGAGTGGCCGCTTCTTTGTCACCACTCTCCCAGCATTTTTTCATGCAAAAGATGGGATATTCCGCCG
TTACCGTGGTCCAGGAATCTATGAAGATTTACAGAATTACATATTAGAGAAGAAATGGCAATCAGTTGAG
CCTCTCACTGGCTGGAAGTCCCCAGCCTCTCTAACGATGTCTGGAATGGCTGGTCTTTTTAGCATCTCTG
GCAAGATTTGGCACCTTCACAACTATTTCACAGTGACCCTTGGAATTCCTGCATGGTGTTCTTACGTTTT
TTTCGTCATTGCCACATTGGTGTTTGGCCTGTTCATGGGTCTGATCCTGGTGGTGATTTCAGAATGTTTC
TGTGTGCCTCTTCCAAGAGCTTCCTCTGAACGCTGTGAGCAGGAGCAGAGTACTGGAGAGGCTCAAGGAG
CTGAGCAGCTACAGGATGCAGAGGAAGAAAAGGATGACTCAAATGAAGAAGAAAACAAAGACAGTCTTGT
GGATGATGAGGAAGAGAAAGAGGACATTGGAGATGAGGATGAAGGAGAAGAAGATGAGGAAGAGGACAAC
TTGGCAGGCATCATGGCTGAGGAGAGAAGTGACACCAACGAGCGAGCAGTTGTGAAGGAGGGTAGTGTGT
CCCCAAAGGAGGACGGAGCTCACCCAGCTGACACTCAGGACGTGGTGGAAGACGCCCTGAGGCAGCGCAA
GAGTCAGAATGCCAACAAGGGATCTTAG

Translation (335 aa):
MTGGFCVPVLLAAWLAAAAAEGLEQAALPAEESRVQPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEW
ETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVE
PLTGWKSPASLTMSGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLILVVISECF
CVPLPRASSERCEQEQSTGEAQGAEQLQDAEEEKDDSNEEENKDSLVDDEEEKEDIGDEDEGEEDEEEDN
LAGIMAEERSDTNERAVVKEGSVSPKEDGAHPADTQDVVEDALRQRKSQNANKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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