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Report for CCDS39553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39553.1 Public Mus musculus 6 Sec61a1 23 108 98 CCDS HistoryNCBI Gene:53421Re-query CCDS DB by CCDS ID:39553.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032168.6 ENSMUSP00000032168.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032168.6Link to Ensembl Protein Viewer:ENSMUSP00000032168.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032168Re-query CCDS DB by Protein ID:ENSMUSP00000032168
Original member NCBI NM_016906.4 NP_058602.1 Updated not alive Link to Nucleotide Sequence:NM_016906.4Link to Protein Sequence:NP_058602.1Re-query CCDS DB by Nucleotide ID:NM_016906Re-query CCDS DB by Protein ID:NP_058602
Current member NCBI NM_016906.5 NP_058602.1 Accepted alive Link to Nucleotide Sequence:NM_016906.5Link to Protein Sequence:NP_058602.1Re-query CCDS DB by Nucleotide ID:NM_016906Re-query CCDS DB by Protein ID:NP_058602Link to BLAST:NP_058602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058602.1 476 P61620 476 100% 0 0

Chromosomal Locations for CCDS 39553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88505107 88505293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88506145 88506221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88506741 88506932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88507172 88507369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88508562 88508722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88512102 88512255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88512496 88512605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88514313 88514444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88515344 88515422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88515504 88515569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88518371 88518438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88518686 88518692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGATCAAATTTCTGGAAGTCATCAAGCCATTCTGTGTCATCTTGCCGGAAATTCAGAAGCCAGAGA
GAAAGATTCAGTTTAAGGAGAAAGTTCTGTGGACAGCCATCACCCTCTTCATCTTCTTAGTATGCTGTCA
GATCCCCCTGTTTGGCATCATGTCTTCAGACTCAGCTGACCCGTTCTACTGGATGCGAGTGATTCTGGCC
TCTAACAGAGGTACCTTAATGGAGCTGGGCATCTCTCCTATTGTCACCTCCGGTCTTATCATGCAGCTCT
TAGCTGGTGCCAAGATAATTGAAGTTGGGGACACCCCGAAAGACCGAGCTCTCTTCAATGGAGCCCAGAA
GTTGTTTGGAATGATCATTACTATCGGTCAGTCCATTGTGTATGTGATGACGGGCATGTACGGGGACCCT
TCGGAGATGGGTGCTGGAATCTGCCTGCTGATCACCATTCAGCTCTTTGTTGCTGGCTTAATTGTCCTAC
TTTTGGATGAACTTCTGCAAAAAGGGTACGGCTTGGGCTCTGGCATTTCTCTCTTCATTGCGACTAACAT
CTGTGAGACCATTGTGTGGAAGGCATTCAGCCCCACCACTGTCAACACTGGCCGAGGGATGGAATTCGAA
GGCGCCATCATAGCGCTATTCCACCTGCTGGCCACCCGCACAGACAAGGTCCGAGCCCTTCGAGAGGCAT
TCTACCGCCAGAACCTCCCCAACCTCATGAACCTGATTGCCACCATCTTCGTCTTTGCCGTTGTCATCTA
TTTCCAGGGCTTCCGAGTGGACCTTCCAATCAAGTCGGCGCGTTACCGAGGCCAGTACAACACCTATCCC
ATCAAGCTCTTCTACACCTCCAACATCCCCATCATCTTGCAGTCTGCTCTGGTGTCCAACCTGTATGTCA
TCTCCCAGATGCTGTCAGCACGCTTCAGTGGCAACCTGCTGGTTAGCCTGCTGGGCACCTGGTCGGATAC
ATCATCTGGGGGCCCAGCCCGAGCTTACCCCGTTGGTGGCCTGTGTTACTACCTGTCTCCTCCGGAATCG
TTCGGCTCAGTGCTGGAGGACCCTGTCCATGCGGTCGTGTACATCGTGTTCATGCTGGGCTCCTGTGCAT
TCTTCTCCAAAACATGGATCGAAGTCTCAGGTTCTTCTGCCAAAGATGTTGCAAAGCAGCTGAAGGAGCA
GCAGATGGTGATGAGGGGCCACAGGGAGACCTCCATGGTGCATGAGCTCAACCGGTACATCCCCACAGCC
GCAGCCTTTGGTGGGCTGTGCATTGGGGCCCTCTCTGTCCTGGCTGACTTCCTGGGTGCTATCGGGTCTG
GAACTGGGATCCTGCTTGCGGTCACCATCATCTACCAGTACTTTGAGATCTTCGTCAAGGAACAGAGCGA
GGTGGGCAGCATGGGAGCCCTTCTCTTCTGA

Translation (476 aa):
MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILA
SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDP
SEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFE
GAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYP
IKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPES
FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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