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Report for CCDS51181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51181.1 Public Mus musculus 4 Ptpn3 23 108 98 CCDS HistoryNCBI Gene:545622Re-query CCDS DB by CCDS ID:51181.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075637.10 ENSMUSP00000075063.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075637.10Link to Ensembl Protein Viewer:ENSMUSP00000075063.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075637Re-query CCDS DB by Protein ID:ENSMUSP00000075063
Original member Current member NCBI NM_011207.2 NP_035337.2 Accepted alive Link to Nucleotide Sequence:NM_011207.2Link to Protein Sequence:NP_035337.2Re-query CCDS DB by Nucleotide ID:NM_011207Re-query CCDS DB by Protein ID:NP_035337Link to BLAST:NP_035337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035337.2 913 A2ALK8 913 100% 0 0

Chromosomal Locations for CCDS 51181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 57194285 57194362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57195702 57195837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57196351 57196496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57197506 57197634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57204907 57205053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57205885 57205946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57206214 57206304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57218509 57218669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57221898 57222054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57223619 57223675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57225506 57225583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57225714 57225900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57232322 57232498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57235222 57235356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57239528 57239700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57240786 57240849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57244975 57245063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57248658 57248745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57249908 57250028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57254917 57254969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57257975 57258019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57262429 57262507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57264866 57264908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57264983 57265090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57270023 57270160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGACCTCCCGGTTACGTGCGTTGGGTGGAAGAATTAACAATACCCGAACCTCTGAATTGCCCAAAGAGA
AAACTCGATCCGAGGTCATCTGCAGCATACGGTTTTTAGATGGCTTGGTACAGACCTTTAAAGTTAACAA
ACAAGATTTGGGCCAGTCGCTTCTGGATATGGCCTATGGCCACCTGGGTGTGACGGAGAAGGAATACTTC
GGCTTGCAACATGGCGACGACCCAGTGGACTCTCCTAGATGGCTTGAGGCAAGCAAACCCCTCAGGAAGC
AGCTGAAAGGAGGTTTTCCCTGTACCCTGCATTTTCGAGTAAGATATTTTATACCTGATCCCAACACACT
GCAGCAGGAGCAAACCAGGCATCTATATTTCTTACAACTGAAGATGGATGTTTGCGAAGGAAGGTTAACC
TGCCCTCTCAACTCAGCGGTGGTTCTAGCCTCGTACGCAGTACAATCTCATTTTGGAGACTTTAATTCTT
CAATACATCATCCAGGCTATCTTGCCGACAGCCAGTTCATACCAGATCAAAATGATGACTTTTTAAGCAA
GGTGGAGTCACTCCATGAACAGCACAGTGGGCTAAAGCAGTCGGAAGCCGAATCTTGCTACATCAACATA
GCTCGAACCCTTGACTTCTACGGAGTGGAGCTTCATGGAGGCAGAGATCTGCACAACCTAGATCTAATGA
TCGGGATTGCGTCTGCAGGCATTGCAGTCTACCGAAAATACATTTGCACAAGTTTCTACCCTTGGGTGAA
CATACTCAAAATTTCTTTCAAAAGGAAAAAGTTCTTCATACACCAGCGGCAAAAACAGGCTGAATCCAGG
GAACATATCGTGGCCTTCAACATGCTGAATTACCGATCTTGCAAAAACTTGTGGAAATCCTGCGTCGAAC
ACCATTCGTTCTTTCAGGCAAAAAAGTTACTACCTCAGGAAAAGAATGTTCTCTCTCAGTACTGGACTCT
AGGCTCCAGGAACCCCAAAAAGTCTGTAAATAACCAATATTGCAAAAAGGTGATTGGAGGGATGGTGTGG
AACCCAGTCATGAGGAGGTCCTTATCAGTGGAACGGCTGGAAACCAAGAGCCTGCCTTCCCGGTCCCCTC
CCATCACCCCCAACTGGCGAAGTCCTCGGCTCCGGCATGAAATCCGCAAGCCCCGCCATTCCTCCGCGGA
CAACCTGGCCAATGAGATGACCTACATCACAGAAACCGAGGATGTGTTCTATACCTACAAGGGACCCCTG
TCCCCCAAAGACAGCGACTCTGAAGTCTCCCAGAACCACAGCCCACACCGGGAGAGTTTGTCCGAAAACA
ACCCAGCCCAAAGCTGCCTGACCCAGAAGTCATCCAGTTCTGTGTCTCCATCTTCGAATGCTCCAGGCTC
CTGCTCTCCAGATGGAGTTGACCAGCGGTTCTTAGAAGACTACCACAAGGTGACCAAAGGGGGGTTCGTC
GAGGACGCCAGCCAGTACTACTGTGATAAGAGTGACGATGGAGATGGCTACCTAGTCCTGATCCGGATCA
CACCAGATGAAGAGGGAAGATTTGGCTTTAACCTTAAGGGAGGAGTGGATCAAAAGATGCCGCTCGTGGT
CTCGAGGATAAACCCAGAGTCACCTGCAGATACCTGCATGCCTAAGCTGAATGAGGGGGATCAGATCGTG
TTGATCAATGGCCGGGACATCTCAGAGCACACTCATGACCAGGTGGTGATGTTCATCAAAGCAAGCCGGG
AGTCCCACTCGAGAGAACTGGCCCTGGTGATCAGGAGAAAAGCTGTGCGCTCGCTGGCGGAGATCAGATC
AGAAGATGAGCTGAGTCAGCTTTTCCCAGAAGCCATGTTTCCTGCATGTCCTGAGGGTGGGGACAGTCTG
GAGGGATCCATGGAGCTGCTGAAGAAAGGTCTGGAAAGCGGTACAGTGTTGATCCAGTTTGAGCAACTCT
ACAGAAAGAAGCCCGGCTTAGCCGTCTCATTTGCAAAGCTGCCTCAGAATTTGGATAAAAACCGATACAA
AGATGTGTTGCCTTATGATACCACGCGGGTATTATTGCAGGGAAATGAAGATTACATTAATGCCAGTTAT
GTGAACATGGAGATGCCCGCTGCTAACCTTGTGAACAAGTACATTGCCACTCAGGGACCGCTGCCAAACA
CCTGTGCACAGTTTTGGCAAGTTGTCTGGGATCAGAAGTTGTCTCTTGTTGTCATGCTGACGACTCTCAC
CGAGCGAGGGCGGACCAAATGTCACCAGTACTGGCCGGATCCCCCTGACATCATGGACCATGGCATCTTT
CACATCCAGTGTCAGACAGAGGACTGTACCATTGCTTACGTGTCCCGAGAAATGCTAGTTACAAACACGG
AGACCGGGGAAGAACACACAGTGACCCATCTCCAGTATGTGGCGTGGCCTGACCACGGCGTACCTGATGA
CTCATCAGACTTCCTGGAGTTTGTGAAGTATGTGAGGTCCCTGAGGGTCGACGGTGAGCCTGCCCTCGTT
CACTGCAGTGCTGGAATAGGTCGGACAGGTGTTTTAGTCACTATGGAAACAGCCATGTGCTTAATTGAGA
GGAACCTGCCTGTTTACCCACTGGATATTGTCCGGAAAATGAGAGACCAGCGCGCGATGATGGTGCAGAC
GTCAAGCCAATACAAGTTTGTGTGTGAAGCGATCCTTCGAGTGTACGAAGAAGGCTTAGTCCAGAGGCTG
GATCCCAGTTAG

Translation (913 aa):
MTSRLRALGGRINNTRTSELPKEKTRSEVICSIRFLDGLVQTFKVNKQDLGQSLLDMAYGHLGVTEKEYF
GLQHGDDPVDSPRWLEASKPLRKQLKGGFPCTLHFRVRYFIPDPNTLQQEQTRHLYFLQLKMDVCEGRLT
CPLNSAVVLASYAVQSHFGDFNSSIHHPGYLADSQFIPDQNDDFLSKVESLHEQHSGLKQSEAESCYINI
ARTLDFYGVELHGGRDLHNLDLMIGIASAGIAVYRKYICTSFYPWVNILKISFKRKKFFIHQRQKQAESR
EHIVAFNMLNYRSCKNLWKSCVEHHSFFQAKKLLPQEKNVLSQYWTLGSRNPKKSVNNQYCKKVIGGMVW
NPVMRRSLSVERLETKSLPSRSPPITPNWRSPRLRHEIRKPRHSSADNLANEMTYITETEDVFYTYKGPL
SPKDSDSEVSQNHSPHRESLSENNPAQSCLTQKSSSSVSPSSNAPGSCSPDGVDQRFLEDYHKVTKGGFV
EDASQYYCDKSDDGDGYLVLIRITPDEEGRFGFNLKGGVDQKMPLVVSRINPESPADTCMPKLNEGDQIV
LINGRDISEHTHDQVVMFIKASRESHSRELALVIRRKAVRSLAEIRSEDELSQLFPEAMFPACPEGGDSL
EGSMELLKKGLESGTVLIQFEQLYRKKPGLAVSFAKLPQNLDKNRYKDVLPYDTTRVLLQGNEDYINASY
VNMEMPAANLVNKYIATQGPLPNTCAQFWQVVWDQKLSLVVMLTTLTERGRTKCHQYWPDPPDIMDHGIF
HIQCQTEDCTIAYVSREMLVTNTETGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVKYVRSLRVDGEPALV
HCSAGIGRTGVLVTMETAMCLIERNLPVYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGLVQRL
DPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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