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Report for CCDS24821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24821.1 Public Mus musculus 11 Akap10 23 108 98 CCDS HistoryNCBI Gene:56697Re-query CCDS DB by CCDS ID:24821.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102650.9 ENSMUSP00000099710.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102650.9Link to Ensembl Protein Viewer:ENSMUSP00000099710.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102650Re-query CCDS DB by Protein ID:ENSMUSP00000099710
Original member Current member NCBI NM_019921.3 NP_064305.2 Accepted alive Link to Nucleotide Sequence:NM_019921.3Link to Protein Sequence:NP_064305.2Re-query CCDS DB by Nucleotide ID:NM_019921Re-query CCDS DB by Protein ID:NP_064305Link to BLAST:NP_064305.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064305.2 662 O88845-1 662 100% 0 0

Chromosomal Locations for CCDS 24821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61873016 61873021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61877307 61877402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61877974 61878026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61886700 61886782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61890238 61890347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61893380 61893553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61896648 61896792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61900310 61900446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61903907 61904030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61904775 61904859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61909848 61909946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61915024 61915581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61916084 61916266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61922782 61922829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61929989 61930076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAGGGGAGCCGGGCCCTCCCCGCGACACTCCCCCCGCGCCCTCCGCCCCGACCCGGGCCCCGCCATGT
CCTTCTTCCGGCGGAAAGTGAAAGGTAAAGAGCAAGAGAAGACCTTAGATGTCAAGTCCACTAAAGCTTC
AGTAGCCGTACATTCCCCACAAAAAAGCACTAAAAATCATGCCTTGCTGGAGGCTGCAGGACCAAGTCAT
GTTGCGATCAATGCCATTTCTGCCAACATGGACTCCTTTTCAAGTAGCAGGACAGCAACGCTTAAGAAAC
AGCCAAGCCACATGGAGGCTGCTCATTTTGGAGACCTAGGCAGATCCTGTCTGGACTATCAGACTCAAGA
GACCAAATCCAGTCTTTCAAAGACCCTTGAACAAGTCTTGCGTGACACTGTTGTCCTTCCATATTTCCTT
CAGTTTATGGAACTTCGGAGAATGGAGCACCTGGTGAAATTTTGGTTAGAGGCTGAAAGTTTTCACTCTA
CAACGTGGTCCCGAATAAGAGCACACAGTCTAAACACAGTGAAACAGAGTTCACTGGCTGAGCCTGTCTC
TCCATCTAAAAGACATGAGACTCCAGCATCTTCTGTAACTGAGGCTCTTGACAGGAGGTTGGGGGATTCT
AGCTCAGCCCCACTGCTTGTGACTCAATCAGAAGGAACTGACCTGAGTAGTAGAACTCAGAACCCTCAGA
ACCACTTGCTGCTTTCCCAGGAAGGCCACAGTGCCCGTTCTCTCCATCGTGAGGTGGCCAGAACAGGAAG
TCATCAGATTCCCACCGACTCCCAGGACTCCTCCTCCAGACTTGCAGTAGGCAGTAGAAACAGTTGCTCT
TCTCCACTGAGAGAACTGTCAGAAAAACTAATGAAAAGTATAGAACAAGATGCAGTGAATACTTTTACCA
AATATATATCTCCAGATGCTGCTAAGCCAATACCAATTACAGAAGCCATGAGAAACGACATCATCGCAAA
GATTTGTGGAGAAGATGGACAGGTGGATCCCAACTGTTTCGTTCTGGCACAGGCTGTAGTCTTTAGTGCA
ATGGAGCAAGAGCACTTTAGTGAGTTTCTGCGAAGTCACCATTTCTGTAAATACCAGATTGAAGTGCTGA
CCAGTGGGACTGTTTACCTGGCTGATATCCTCTTCTGTGAGTCAGCCCTCTTTTATTTTTCTGAGTACAT
GGAAAAAGAAGATGCAGTGAATATCTTACAATTCTGGTTAGCAGCGGATAATTTCCAGTCTCAGCTTGCT
GCCAAAAAGGGCCAGTATGATGGACAGGAGGCCCAGAATGATGCCATGATTTTATATGACAAGTACTTTT
CCCTCCAAGCCACACACCCCCTTGGATTTGATGATGTTGTACGATTAGAAATTGAATCTAATATCTGCAG
GGAAGGTGGACCACTTCCTAATTGTTTCACAACTCCATTACGTCAGGCCTGGACAACCATGGAGAAGGTC
TTTTTGCCTGGTTTTCTGTCCAGCAATCTTTATTACAAATATTTGAATGATCTCATCCATTCAGTTCGAG
GAGATGAATTTCTTGGAGGGAATGTTTCCCTGGCTGCTCACGGCTCTGTCTGCCTTCCTGAGGAGTCTCA
CTCAGGTGGTTCCGATGGCTCCACTGCTCAGTCTAGTGTGAAAAAAGCCAGTATTAAAATTCTGAAAAAT
TTTGATGAAGCAATAATTGTGGATGCTGCAAGTCTGGACCCAGAATCTTTATATCAACGGACATATGCAG
GGAAGATGTCCTTTGGGAGAGTTAGTGATTTGGGGCAGTTCATCCGAGAGTCTGAGCCTGAACCTGATGT
GAAGAAATCAAAAGGATTCATGTTCTCACAAGCTATGAAGAAGTGGGTGCAAGGAAATACTGACGAGGCC
CAAGAAGAGCTAGCTTGGAAGATTGCAAAAATGATAGTGAGTGATGTTATGCAGCAGGCACACCATGATC
AACCACTAGAGAAGTCTACAAAGCTATGA

Translation (662 aa):
MRGAGPSPRHSPRALRPDPGPAMSFFRRKVKGKEQEKTLDVKSTKASVAVHSPQKSTKNHALLEAAGPSH
VAINAISANMDSFSSSRTATLKKQPSHMEAAHFGDLGRSCLDYQTQETKSSLSKTLEQVLRDTVVLPYFL
QFMELRRMEHLVKFWLEAESFHSTTWSRIRAHSLNTVKQSSLAEPVSPSKRHETPASSVTEALDRRLGDS
SSAPLLVTQSEGTDLSSRTQNPQNHLLLSQEGHSARSLHREVARTGSHQIPTDSQDSSSRLAVGSRNSCS
SPLRELSEKLMKSIEQDAVNTFTKYISPDAAKPIPITEAMRNDIIAKICGEDGQVDPNCFVLAQAVVFSA
MEQEHFSEFLRSHHFCKYQIEVLTSGTVYLADILFCESALFYFSEYMEKEDAVNILQFWLAADNFQSQLA
AKKGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNCFTTPLRQAWTTMEKV
FLPGFLSSNLYYKYLNDLIHSVRGDEFLGGNVSLAAHGSVCLPEESHSGGSDGSTAQSSVKKASIKILKN
FDEAIIVDAASLDPESLYQRTYAGKMSFGRVSDLGQFIRESEPEPDVKKSKGFMFSQAMKKWVQGNTDEA
QEELAWKIAKMIVSDVMQQAHHDQPLEKSTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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