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Report for CCDS17390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17390.1 Public Mus musculus 3 Ccnl1 23 108 98 CCDS HistoryNCBI Gene:56706Re-query CCDS DB by CCDS ID:17390.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17390.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029416.13 ENSMUSP00000029416.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029416.13Link to Ensembl Protein Viewer:ENSMUSP00000029416.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029416Re-query CCDS DB by Protein ID:ENSMUSP00000029416
Original member Current member NCBI NM_019937.4 NP_064321.2 Accepted alive Link to Nucleotide Sequence:NM_019937.4Link to Protein Sequence:NP_064321.2Re-query CCDS DB by Nucleotide ID:NM_019937Re-query CCDS DB by Protein ID:NP_064321Link to BLAST:NP_064321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064321.2 532 Q52KE7-1 532 100% 0 0

Chromosomal Locations for CCDS 17390.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 65946600 65946948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65947691 65947789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65947897 65948008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65948262 65948403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65948496 65948600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65948691 65948790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65950480 65950544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65951434 65951554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65956853 65956962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65957501 65957575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65957808 65958128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGCGTCCGGGCCTCACCCGACCTCGACCGCTGCCGCCGCCGCCGCCGCTGCCGCCTCCGCCTCGTCCG
CCGCCCCGAGCGCGGGCGGCTCCAGCTCCGGCACGACCACCACGACGACGACCACGACCGGAGGGATCCT
GATCGGCGACCGCCTGTATTCGGAGGTGTCGCTCACCATCGACCACTCGCTGATCCCGGAGGAGCGGCTC
TCGCCTACCCCGTCCATGCAGGACGGCCTGGACCTGCCCAGCGAGACGGATCTGCGCATCTTGGGCTGCG
AGCTCATCCAGGCCGCCGGCATCCTCCTCCGGCTGCCGCAGGTGGCGATGGCTACAGGGCAGGTGCTGTT
CCATCGGTTCTTCTACTCCAAGTCGTTCGTCAAACACAGTTTCGAGATTGTTGCTATGGCCTGTATTAAT
CTTGCGTCAAAAATCGAAGAAGCGCCAAGAAGAATAAGAGATGTGATTAATGTATTCCACCACCTCCGCC
AGTTAAGAGGAAAAAGGACTCCAAGCCCCCTGATCCTTGATCAGAACTACATTAACACCAAAAATCAAGT
TATCAAGGCAGAGAGGAGGGTGCTAAAGGAGTTGGGATTTTGTGTTCATGTCAAGCATCCCCATAAGATC
ATTGTAATGTATTTACAAGTCTTAGAATGTGAACGTAACCAAACCCTGGTTCAAACTGCCTGGAATTACA
TGAATGACAGTCTTCGAACCAATGTCTTTGTTCGCTTTCAACCAGAGACTATAGCATGTGCTTGTATCTA
CCTTGCAGCTAGAGCACTTCAAATTCCCTTGCCAACTCGGCCCCATTGGTTTCTTCTGTTTGGTACCACA
GAAGAGGAGATTCAGGAAATCTGCATAGAGACGCTTAGACTTTATACCAGGAAAAAGCCTAACTATGAAT
TGCTGGAAAAGGAAGTAGAAAAAAGAAAAGTAGCCTTACAGGAAGCCAAGTTAAAAGCAAAGGGATTGAA
TCTTGATGGAACTCCAGCCCTTTCAACTCTTGGTGGATTTTCTCCAGCCTCTAAACCATCATCACCAAGA
GAAGTGAAAGCTGAAGAGAAATCACCAGTCTCCATTAATGTGAAGACAGTCAAAAAAGAACCTGAGGATA
GACAGCAGGCGTCAAAAAGCCCTTACAATGGTGTAAGAAAAGACAGCAAGAGAAGCAGAACCAGCAGAAG
TGCTAGTAGATCAAGGTCAAGAACCAGGTCCCGTTCCAGATCACACAGCCCAAGAAGACATTATAATAAT
AGGCGAAGTCGATCTGGAACATACAGCTCAAGATCAAGAAGCAGGTCTCGCAGTCACAGTGAAAGCCCTC
GAAGACATCATAATCATGGTTCTCCTCACCTTAAGGCCAAACATACCAGAGAAGATTTAAAAAGCTCAAA
TAGACACGGTCATAAGAGGAAAAAGTCTCGGTCTCGATCTCAGAGCAAGACTCGGGATCACTCAGATGTT
ACCAAGAAACACAGGCACGAAAGGGGACATCACAGAGACAGGCGTGAACGATCTCGCTCCTTTGAGAGGT
CCCATAAAGGCAAGCACCATGGTGGCAGTCGCTCAGGACATGGCAGGCATAGGCGCTGA

Translation (532 aa):
MASGPHPTSTAAAAAAAAASASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTIDHSLIPEERL
SPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACIN
LASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKI
IVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTT
EEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNLDGTPALSTLGGFSPASKPSSPR
EVKAEEKSPVSINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRTSRSASRSRSRTRSRSRSHSPRRHYNN
RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTREDLKSSNRHGHKRKKSRSRSQSKTRDHSDV
TKKHRHERGHHRDRRERSRSFERSHKGKHHGGSRSGHGRHRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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