NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29423.1 Public Mus musculus 19 Clcf1 23 108 98 CCDS HistoryNCBI Gene:56708Re-query CCDS DB by CCDS ID:29423.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046506.6 ENSMUSP00000045562.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046506.6Link to Ensembl Protein Viewer:ENSMUSP00000045562.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046506Re-query CCDS DB by Protein ID:ENSMUSP00000045562
Original member NCBI NM_019952.5 NP_064336.1 Updated not alive Link to Nucleotide Sequence:NM_019952.5Link to Protein Sequence:NP_064336.1Re-query CCDS DB by Nucleotide ID:NM_019952Re-query CCDS DB by Protein ID:NP_064336
Current member NCBI NM_019952.6 NP_064336.1 Accepted alive Link to Nucleotide Sequence:NM_019952.6Link to Protein Sequence:NP_064336.1Re-query CCDS DB by Nucleotide ID:NM_019952Re-query CCDS DB by Protein ID:NP_064336Link to BLAST:NP_064336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064336.1 225 Q9QZM3 225 100% 0 0

Chromosomal Locations for CCDS 29423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4214485 4214500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4220178 4220344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4222074 4222568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGACCTCCGAGCAGGGGACTCGTGGGGGATGTTAGCTTGCCTATGCACGGTGCTGTGGCACCTCCCTG
CAGTGCCAGCTCTTAATCGCACAGGAGATCCAGGCCCTGGCCCCTCCATCCAGAAAACCTATGACCTCAC
CCGCTACCTGGAGCATCAACTCCGCAGCTTAGCTGGGACCTACCTGAACTACCTGGGGCCCCCTTTCAAC
GAGCCTGACTTCAATCCTCCTCGACTGGGGGCAGAAACTCTGCCCAGGGCCACGGTCAACTTGGAAGTGT
GGCGAAGCCTCAATGACAGGCTGCGGCTGACCCAGAACTATGAGGCGTACAGTCACCTCCTGTGTTACTT
GCGTGGCCTCAACCGTCAGGCTGCCACAGCTGAACTCCGACGTAGCCTGGCCCACTTCTGTACCAGCCTC
CAGGGCCTGCTGGGCAGCATTGCAGGTGTCATGGCGACGCTTGGCTACCCACTGCCCCAGCCTCTGCCAG
GGACTGAGCCAGCCTGGGCCCCTGGCCCTGCCCACAGTGACTTCCTCCAGAAGATGGATGACTTCTGGCT
GCTGAAGGAGCTGCAGACCTGGCTATGGCGTTCAGCCAAGGACTTCAACCGGCTTAAGAAGAAGATGCAG
CCTCCAGCAGCTTCAGTCACCCTGCACTTGGAGGCCCATGGTTTCTGA

Translation (225 aa):
MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTYDLTRYLEHQLRSLAGTYLNYLGPPFN
EPDFNPPRLGAETLPRATVNLEVWRSLNDRLRLTQNYEAYSHLLCYLRGLNRQAATAELRRSLAHFCTSL
QGLLGSIAGVMATLGYPLPQPLPGTEPAWAPGPAHSDFLQKMDDFWLLKELQTWLWRSAKDFNRLKKKMQ
PPAASVTLHLEAHGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH