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Report for CCDS29786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29786.1 Public Mus musculus 19 Lgi1 23 108 98 CCDS HistoryNCBI Gene:56839Re-query CCDS DB by CCDS ID:29786.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198518.4 ENSMUSP00000143128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198518.4Link to Ensembl Protein Viewer:ENSMUSP00000143128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198518Re-query CCDS DB by Protein ID:ENSMUSP00000143128
Original member Current member NCBI NM_020278.3 NP_064674.1 Accepted alive Link to Nucleotide Sequence:NM_020278.3Link to Protein Sequence:NP_064674.1Re-query CCDS DB by Nucleotide ID:NM_020278Re-query CCDS DB by Protein ID:NP_064674Link to BLAST:NP_064674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064674.1 557 Q9JIA1-1 557 100% 0 0

Chromosomal Locations for CCDS 29786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38264883 38265097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38265575 38265646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38283970 38284041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38284142 38284213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38297929 38298000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38300708 38300877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38301161 38301325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38305620 38306455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGAATCAGAAAGCAGCAGAAGGATGGGAAATGCCTGCATTCCCCTGAAAAGAATTGCCTATTTCCTAT
GCCTCTTTTCTGTGGTTTTGCTGACTGAGGGGAAGAAACCAGCGAAGCCAAAATGCCCTGCCGTGTGTAC
TTGTAGCAAAGATAACGCTTTATGTGAGAATGCGAGATCCATTCCACGCACCGTTCCTCCTGATGTTATC
TCACTATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGC
AGCTCTTGTTATTTACGTCGAACTCCTTTGATGTGATCAGTGATGATGCTTTTATTGGTCTTCCACATCT
AGAATATTTATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCT
TTGATTCACTTGAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATT
CCTTAACAAATGTGGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATG
GCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAA
ATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAGAATTTGCAAAGTCCCAAGACCTACCTT
ATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTAC
TGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAGGC
ACGTCCACTGTGGTGTGCAAGCCCATAGTTATTGACACTCAGCTCTATGTCATTGTGGCCCAGCTGTTTG
GTGGCTCTCATATCTATAAGCGAGATGGTTTTGCAAACAAATTCATAAAAATCCAAGATATTGAAGTTCT
CAAAATTCGAAAACCCAATGACATCGAAACATTCAAGATTGAAGACAACTGGTACTTCGTTGTCGCTGAC
AGTTCCAAAGCTGGGTTTACTACCATTTACAAGTGGAATGGAAACGGATTCTACTCCCACCAATCCTTAC
ATGCCTGGTACAGGGATACTGATGTGGAATACCTTGAAATAGCCAGACCACCATTGGCCCTCAGAACACC
TCATTTAATCCTGTCCAGTAGTTCTCAGCGCCCTGTTATTTACCAGTGGAGCAAAGCAACACAGCTATTC
ACTAACCAAACCGACATTCCTAACATGGAGGACGTATACGCGGTGAAGCACTTCTCTGTGAAAGGTGATG
TGTACATCTGCTTGACCAGATTCATTGGCGACTCTAAAGTCATGAAGTGGGGCGGCTCCTCCTTCCAGGA
CATCCAGAGGATGCCATCTCGAGGATCCATGGTGTTCCAACCTCTTCAGATAAATAATTACCAATATGCA
ATTCTCGGAAGCGATTACTCCTTTACTCAAGTGTATAACTGGGATGCAGAGAAAGCCAAATTTGTGAAGT
TTCAGGAGTTAAACGTTCAGGCACCCAGATCATTCACACACGTATCCATTAATAAGCGTAATTTTCTCTT
TGCTTCCAGTTTTAAGGGAAACACGCAGATTTACAAACATGTCATAGTTGACTTAAGCGCATGA

Translation (557 aa):
MESESSRRMGNACIPLKRIAYFLCLFSVVLLTEGKKPAKPKCPAVCTCSKDNALCENARSIPRTVPPDVI
SLSFVRSGFTEISEGSFLFTPSLQLLLFTSNSFDVISDDAFIGLPHLEYLFIENNNIKSISRHTFRGLKS
LIHLSLANNNLQTLPKDIFKGLDSLTNVDLRGNAFNCDCKLKWLVEWLGHTNATVEDIYCEGPPEYKKRK
INSLSPKDFDCIITEFAKSQDLPYQSLSIDTFSYLNDEYVVIAQPFTGKCIFLEWDHVEKTFRNYDNITG
TSTVVCKPIVIDTQLYVIVAQLFGGSHIYKRDGFANKFIKIQDIEVLKIRKPNDIETFKIEDNWYFVVAD
SSKAGFTTIYKWNGNGFYSHQSLHAWYRDTDVEYLEIARPPLALRTPHLILSSSSQRPVIYQWSKATQLF
TNQTDIPNMEDVYAVKHFSVKGDVYICLTRFIGDSKVMKWGGSSFQDIQRMPSRGSMVFQPLQINNYQYA
ILGSDYSFTQVYNWDAEKAKFVKFQELNVQAPRSFTHVSINKRNFLFASSFKGNTQIYKHVIVDLSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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