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Report for CCDS43568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43568.1 Public Homo sapiens 7 TBX20 24 110 108 CCDS HistoryNCBI Gene:57057Re-query CCDS DB by CCDS ID:43568.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43568.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408931.4 ENSP00000386170.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000408931.4Link to Ensembl Protein Viewer:ENSP00000386170.3Re-query CCDS DB by Nucleotide ID:ENST00000408931Re-query CCDS DB by Protein ID:ENSP00000386170
Original member Current member NCBI NM_001077653.2 NP_001071121.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077653.2Link to Protein Sequence:NP_001071121.1Re-query CCDS DB by Nucleotide ID:NM_001077653Re-query CCDS DB by Protein ID:NP_001071121Link to BLAST:NP_001071121.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071121.1 447 Q9UMR3 447 100% 0 0

Chromosomal Locations for CCDS 43568.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35202430 35202770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35204470 35204582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35231504 35231580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35240879 35241037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35244949 35245057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35248677 35248841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35249951 35250203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35253494 35253620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGAGTTCACGGCGTCCCCCAAGCCCCAACTCTCCTCTCGGGCCAACGCCTTCTCCATTGCCGCGCTCA
TGTCGAGCGGCGGCTCTAAGGAGAAGGAGGCGACGGAGAACACAATCAAACCCCTGGAGCAATTTGTGGA
GAAGTCGTCCTGTGCCCAGCCCCTGGGTGAGCTGACCAGCCTGGATGCTCATGGGGAGTTTGGTGGAGGC
AGTGGCAGCAGCCCGTCCTCCTCCTCTCTGTGCACTGAGCCACTGATCCCCACCACCCCCATCATCCCCA
GTGAGGAAATGGCCAAAATTGCCTGCAGCCTGGAGACCAAGGAGCTTTGGGACAAATTCCATGAGCTGGG
CACCGAGATGATCATCACCAAGTCGGGCAGGAGGATGTTTCCAACCATCCGGGTGTCCTTTTCGGGGGTG
GATCCTGAGGCCAAGTACATAGTCCTGATGGACATCGTCCCTGTGGACAACAAGAGGTACCGCTACGCCT
ACCACCGGTCCTCCTGGCTGGTGGCTGGCAAGGCCGACCCGCCGTTGCCAGCCAGGCTCTATGTGCATCC
AGATTCTCCTTTTACCGGTGAGCAACTACTCAAACAGATGGTGTCTTTTGAAAAGGTGAAACTCACCAAC
AATGAACTGGATCAACATGGCCATATAATTTTGAACTCAATGCATAAGTACCAGCCAAGGGTGCACATCA
TTAAGAAGAAAGACCACACAGCCTCATTGCTCAACCTGAAGTCTGAAGAATTTAGAACTTTCATCTTTCC
AGAAACAGTTTTTACGGCAGTCACTGCCTACCAGAATCAACTGATAACGAAGCTGAAAATAGATAGCAAT
CCTTTTGCCAAAGGATTCCGGGATTCCTCCAGGCTCACTGACATTGAGAGGGAAAGTGTGGAGAGCCTGA
TTCAAAAGCATTCCTATGCACGCTCACCCATCCGTACCTACGGAGGAGAAGAAGATGTCTTGGGGGATGA
GAGTCAGACAACCCCAAATCGAGGGTCAGCCTTTACAACATCTGATAATTTGTCTCTCAGCTCCTGGGTA
TCATCTTCTTCCAGTTTTCCTGGGTTTCAGCACCCACAGTCCCTGACTGCTCTTGGCACCAGCACAGCAT
CCATAGCAACACCCATTCCTCACCCCATCCAGGGTTCTCTGCCACCATATAGCCGACTGGGAATGCCTCT
GACACCATCGGCCATTGCCAGCTCCATGCAAGGGAGTGGCCCCACATTCCCTTCATTCCACATGCCGCGA
TACCATCACTATTTTCAGCAGGGGCCCTATGCTGCCATTCAAGGACTACGCCATTCCTCTGCTGTGATGA
CGCCATTTGTATGA

Translation (447 aa):
MEFTASPKPQLSSRANAFSIAALMSSGGSKEKEATENTIKPLEQFVEKSSCAQPLGELTSLDAHGEFGGG
SGSSPSSSSLCTEPLIPTTPIIPSEEMAKIACSLETKELWDKFHELGTEMIITKSGRRMFPTIRVSFSGV
DPEAKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMVSFEKVKLTN
NELDQHGHIILNSMHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSN
PFAKGFRDSSRLTDIERESVESLIQKHSYARSPIRTYGGEEDVLGDESQTTPNRGSAFTTSDNLSLSSWV
SSSSSFPGFQHPQSLTALGTSTASIATPIPHPIQGSLPPYSRLGMPLTPSAIASSMQGSGPTFPSFHMPR
YHHYFQQGPYAAIQGLRHSSAVMTPFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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