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Report for CCDS28210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28210.1 Public Mus musculus 16 Retnlb 23 108 98 CCDS HistoryNCBI Gene:57263Re-query CCDS DB by CCDS ID:28210.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023328.7 ENSMUSP00000023328.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023328.7Link to Ensembl Protein Viewer:ENSMUSP00000023328.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023328Re-query CCDS DB by Protein ID:ENSMUSP00000023328
Original member Current member NCBI NM_023881.4 NP_076370.3 Accepted alive Link to Nucleotide Sequence:NM_023881.4Link to Protein Sequence:NP_076370.3Re-query CCDS DB by Nucleotide ID:NM_023881Re-query CCDS DB by Protein ID:NP_076370Link to BLAST:NP_076370.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076370.3 105 Q99P86 105 99.0476% 0 1

Chromosomal Locations for CCDS 28210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 48817213 48817339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48818045 48818107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48818628 48818755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGAAGCCTACACTGTGTTTCCTTTTCATCCTCGTCTCCCTTCTCCCACTGATAGTCCCAGGGAACGCGC
AATGCTCCTTTGAGTCTTTGGTGGATCAAAGGATCAAGGAAGCTCTCAGTCGTCAAGAGCCTAAGACGAT
CTCCTGCACTAGTGTCACGTCTTCTGGCAGACTGGCCTCCTGTCCTGCTGGGATGGTTGTCACTGGATGT
GCTTGTGGCTATGGCTGTGGATCGTGGGATATCCGGAATGGAAATACTTGCCACTGCCAGTGCTCAGTCA
TGGACTGGGCCTCTGCCCGCTGCTGCCGAATGGCTTAA

Translation (105 aa):
MKPTLCFLFILVSLLPLIVPGNAQCSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGC
ACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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