NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16057.1 Public Mus musculus 2 Marchf7 23 108 98 CCDS HistoryNCBI Gene:57438Re-query CCDS DB by CCDS ID:16057.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067542.14 ENSMUSP00000068961.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067542.14Link to Ensembl Protein Viewer:ENSMUSP00000068961.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000067542Re-query CCDS DB by Protein ID:ENSMUSP00000068961
Original member Current member EBI ENSMUST00000102747.7 ENSMUSP00000099808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102747.7Link to Ensembl Protein Viewer:ENSMUSP00000099808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102747Re-query CCDS DB by Protein ID:ENSMUSP00000099808
Original member Current member EBI ENSMUST00000102748.10 ENSMUSP00000099809.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102748.10Link to Ensembl Protein Viewer:ENSMUSP00000099809.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102748Re-query CCDS DB by Protein ID:ENSMUSP00000099809
Original member NCBI NM_020575.2 NP_065600.1 Updated not alive Link to Nucleotide Sequence:NM_020575.2Link to Protein Sequence:NP_065600.1Re-query CCDS DB by Nucleotide ID:NM_020575Re-query CCDS DB by Protein ID:NP_065600
Current member NCBI NM_020575.3 NP_065600.1 Accepted alive Link to Nucleotide Sequence:NM_020575.3Link to Protein Sequence:NP_065600.1Re-query CCDS DB by Nucleotide ID:NM_020575Re-query CCDS DB by Protein ID:NP_065600Link to BLAST:NP_065600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065600.1 693 Q9WV66 693 100% 0 0

Chromosomal Locations for CCDS 16057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 60228930 60229082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60229684 60229879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60232200 60232367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60233899 60234997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60236754 60236926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60240943 60241052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60243557 60243670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60245212 60245260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60247890 60247909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGCACTAGGA
TGGTGTCTGGAAACAGAGGAACCAGTTTAAATGATTCATATCATTCTAGAGACTCCTCCTTTAGACTGGA
TTCTGAATATCAGTCTGCATCAGCATCAGCGTGTGCATCACCATGTCAGCCTGCCTGGTACAGTGAGTCT
GAGATACCTCAGGGAGCGCGGGCACGAGCACAGACCCAGCAGCGGGATCATGACTCAAAGAGACCCAAGC
TTTCCTGTACAAACTGTGCATCTACCTCAGCTGGGAGGAACGGTGGGAGTGGGTTAAATACAGTGTCAGA
TTCTTCTTGGAGGCATAGTCAAGTTCCCAGATCTTCATCAATGGTACTTGGTTCATTTGGAACAGACTTG
ATGAGAGAAAGGAGAGATTTGGACAGGAGAAGAGAGTCCTCCATCAGCAATCTTATGGATTATAATCACC
GAAGTGGTGATTTCACAACTTCATCATATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAG
ACCAAAAGAGAATGCAGTGAGCACTTTACAGTTGAATTCATCATCCACCAATCACCAATTGCCTTCTGAC
CATCAGACAGTACCAAGTTCTAGGGACTCCAGTAGAAGTTCTTTCAGATCACATTTTTCTCCAAGACAAT
CAGAATCTTTTCGCAACAGTTCACATCCTGCATTTTCATATTTTTCAAGTAGAAATGAAACTCCAACTAT
AAGCAATTCAGAAAGGGGTTCATCTCAGAGACCATATCGAGAATCTTCTGACAATGAAGGTAGGCGTACA
ACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACTTTTTTCTCACGAAGATCTAGTCAAG
ATTCCTTGAATACAAGATCTTTGAGTTCTGAAAATTATATTTCTCCGAGAACCCTGACTTCACAGTCTCG
GAATAATGGAACCTCCTCGTCCTCTGACGTCAGTGAGGGCAGGGCAGCTGAAGCATCTCAGGGATTTAGA
TTTCTTAGGCGAAGATGGGGGTTGTCGTCGCTCAGCCAAAATCATAGCTCTGAACCAGAGGCAGAAAATT
TTAACCAAGAATCAGAAGGTAGAAATTCAGGACCATGGTTGTCTTCTTCACTTAGAAATAGATGCACACC
TTTGTTCTCGAGAAGGAGGCGAGAGGGAAGGGATGAGTCTTCAAGAATGTCTACGTCAGATGTACCACCT
AGATCTCATATTTTCAGAAGAGATTCAAATGAAGTAGTTCATCTTGAAGCACAGGGTGACTCCCTTGGGG
CTGCTGCCAACCGACCACAAGCATCTGGAGCGTCAAGCAGTGCTGCTGCAGGTGGCTCCACCCCAGAGTT
GCCTCAGGGTGGAAGAAATCCAGGACTAACAGGGATTCTTCCTGGCTCCTTGTTCCGGTTTGCAGTCCCA
CCAGCACTCGGCAGTAATCTGGCTGACAATGTCATGATTACTGTAGATATTATTCCTTCTGGTTGGAATT
CAACTGATGGGAAAAATGATAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAA
AGAAAGCCTCCTTTTAGAGGACTCTGATGATGAAGAAGAAGGGGACTTATGTAGAATTTGTCAGATGGCA
GCAGCGTCATCATCTAATTTATTGATAGAGCCGTGCAAATGCACAGGGAGCCTGCAGTACGTCCATCAAG
AGTGTATGAAAAAGTGGTTACAAGCCAAAATTAATTCTGGCTCTTCATTAGAGGCTGTGACTACCTGTGA
ACTCTGTAAAGAGAAGTTGCAACTTAACCTGGAGGATTTTGATATTCATGAACTACATAGAGCTCATGCA
AATGAACAAGCTGAGTATGAGTTTATCAGCTCTGGTCTCTACCTAGTTGTCTTACTGCACTTGTGTGAAC
AAAGCTTTTCTGATATGATGGGAAATACAATTGAACCAAGCACTCGTGTCCGATTTATTAACCTTGCAAG
AACTCTTCAGGCACATATGGAAGATCTCGAAACTTCAGAGGATGAATTCTGA

Translation (693 aa):
MESKPSRIPRRISVQPSGSLSTRMVSGNRGTSLNDSYHSRDSSFRLDSEYQSASASACASPCQPAWYSES
EIPQGARARAQTQQRDHDSKRPKLSCTNCASTSAGRNGGSGLNTVSDSSWRHSQVPRSSSMVLGSFGTDL
MRERRDLDRRRESSISNLMDYNHRSGDFTTSSYVQERVPSSYSQGARPKENAVSTLQLNSSSTNHQLPSD
HQTVPSSRDSSRSSFRSHFSPRQSESFRNSSHPAFSYFSSRNETPTISNSERGSSQRPYRESSDNEGRRT
TRRLLSRIASSMSSTFFSRRSSQDSLNTRSLSSENYISPRTLTSQSRNNGTSSSSDVSEGRAAEASQGFR
FLRRRWGLSSLSQNHSSEPEAENFNQESEGRNSGPWLSSSLRNRCTPLFSRRRREGRDESSRMSTSDVPP
RSHIFRRDSNEVVHLEAQGDSLGAAANRPQASGASSSAAAGGSTPELPQGGRNPGLTGILPGSLFRFAVP
PALGSNLADNVMITVDIIPSGWNSTDGKNDKAKSAPSRDPEKLQKIKESLLLEDSDDEEEGDLCRICQMA
AASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKLQLNLEDFDIHELHRAHA
NEQAEYEFISSGLYLVVLLHLCEQSFSDMMGNTIEPSTRVRFINLARTLQAHMEDLETSEDEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH