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Report for CCDS13933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13933.1 Public Homo sapiens 22 PVALB 24 110 108 CCDS HistoryNCBI Gene:5816Re-query CCDS DB by CCDS ID:13933.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216200.9 ENSP00000216200.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000216200.9Link to Ensembl Protein Viewer:ENSP00000216200.5Re-query CCDS DB by Nucleotide ID:ENST00000216200Re-query CCDS DB by Protein ID:ENSP00000216200
Original member Current member EBI ENST00000417718.7 ENSP00000400247.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417718.7Link to Ensembl Protein Viewer:ENSP00000400247.2Re-query CCDS DB by Nucleotide ID:ENST00000417718Re-query CCDS DB by Protein ID:ENSP00000400247
Original member Current member NCBI NM_001315532.2 NP_001302461.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001315532.2Link to Protein Sequence:NP_001302461.1Re-query CCDS DB by Nucleotide ID:NM_001315532Re-query CCDS DB by Protein ID:NP_001302461Link to BLAST:NP_001302461.1
Original member Current member NCBI NM_002854.3 NP_002845.1 Accepted alive Link to Nucleotide Sequence:NM_002854.3Link to Protein Sequence:NP_002845.1Re-query CCDS DB by Nucleotide ID:NM_002854Re-query CCDS DB by Protein ID:NP_002845Link to BLAST:NP_002845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001302461.1 110 P20472 110 100% 0 0
NP_002845.1 110 P20472 110 100% 0 0

Chromosomal Locations for CCDS 13933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 36800890 36800918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36813646 36813755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36815103 36815235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 36816945 36817005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGTCGATGACAGACTTGCTGAACGCTGAGGACATCAAGAAGGCGGTGGGAGCCTTTAGCGCTACCGACT
CCTTCGACCACAAAAAGTTCTTCCAAATGGTCGGCCTGAAGAAAAAGAGTGCGGATGATGTGAAGAAGGT
GTTTCACATGCTGGACAAGGACAAAAGTGGCTTCATCGAGGAGGATGAGCTGGGATTCATCCTAAAAGGC
TTCTCCCCAGATGCCAGAGACCTGTCTGCTAAAGAAACCAAGATGCTGATGGCTGCTGGAGACAAAGATG
GGGACGGCAAAATTGGGGTTGACGAATTCTCCACTCTGGTGGCTGAAAGCTAA

Translation (110 aa):
MSMTDLLNAEDIKKAVGAFSATDSFDHKKFFQMVGLKKKSADDVKKVFHMLDKDKSGFIEEDELGFILKG
FSPDARDLSAKETKMLMAAGDKDGDGKIGVDEFSTLVAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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