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Report for CCDS23092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23092.1 Public Mus musculus 9 Nectin1 23 108 98 CCDS HistoryNCBI Gene:58235Re-query CCDS DB by CCDS ID:23092.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034510.8 ENSMUSP00000034510.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034510.8Link to Ensembl Protein Viewer:ENSMUSP00000034510.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034510Re-query CCDS DB by Protein ID:ENSMUSP00000034510
Original member Current member NCBI NM_021424.3 NP_067399.2 Accepted alive Link to Nucleotide Sequence:NM_021424.3Link to Protein Sequence:NP_067399.2Re-query CCDS DB by Nucleotide ID:NM_021424Re-query CCDS DB by Protein ID:NP_067399Link to BLAST:NP_067399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067399.2 515 Q9JKF6 515 100% 0 0

Chromosomal Locations for CCDS 23092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 43744644 43744722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43791037 43791387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43791877 43792179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43792448 43792565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43794090 43794241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43803472 43804016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCTCGGATGGGGCTTGCGGGCGCCGCTGGACGCTGGTGGGGACTCGCTCTCGGCTTGACCGCCTTCT
TCCTCCCAGGCACTCACACGCAGGTGGTGCAGGTGAACGACTCCATGTATGGCTTCATCGGCACAGATGT
GGTACTGCACTGTAGCTTTGCCAACCCACTGCCCAGTGTGAAAATCACCCAGGTCACATGGCAGAAGGCC
TCCAATGGCTCCAAACAGAACATGGCCATCTACAACCCGACTATGGGTGTGTCCGTGCTGCCTCCCTACG
AGAAACGAGTGGAGTTCCTGCGACCCTCCTTCATCGACGGCACCATCCGCCTCTCCGGTCTGGAGCTGGA
GGACGAGGGCATGTACATCTGTGAATTTGCCACCTTCCCTACGGGCAACCGTGAAAGCCAGCTCAATCTC
ACTGTGATGGCCAAACCCACCAACTGGATTGAGGGCACCCGGGCGGTGCTTCGAGCCAGGAAGGGACAGG
ATGACAAGGTTTTGGTGGCCACCTGCACCTCAGCCAATGGGAAGCCTCCCAGTGCGGTGTCCTGGGAAAC
ACGGCTAAAGGGCGAGGCAGAGTACCAGGAAATTCGGAACCCCAATGGCACCGTGACAGTCATCAGCCGT
TACCGTTTGGTGCCCAGCAGGGAAGCCCACCGGCAGTCGCTGGCCTGCATTGTCAACTATCACCTGGACC
GCTTCAGGGAGAGCCTTACGCTCAACGTGCAGTATGAACCTGAGGTGACCATTGAGGGCTTTGATGGCAA
CTGGTACCTGCAGCGGACAGATGTGAAGCTCACGTGCAAAGCGGATGCTAACCCGCCAGCCACTGAGTAC
CACTGGACCACATTGAATGGCTCTCTCCCCAAGGGTGTAGAGGCCCAGAACAGGACCCTCTTCTTCCGGG
GACCTATCACCTACAGCCTGGCAGGAACCTACATCTGTGAGGCCACCAACCCTATTGGCACCCGATCGGG
CCAGGTGGAGGTCAATATCACAGAATTCCCCTACACCCCGACTCCTGAACACGGGCGGCGCGCCGGGCAG
ATGCCCACAGCCATCATTGGGGGCGTGGCAGGGAGTGTCCTGCTGGTGCTGATTGTGGTCGGAGGGATCA
TAGTGGCCCTGCGCAGGCGCCGGCACACCTTCAAGGGTGACTACAGCACCAAGAAGCACGTGTACGGCAA
CGGCTACAGCAAGGCAGGCATCCCGCAGCATCACCCGCCCATGGCACAGAACCTGCAGTACCCGGATGAC
TCGGATGATGAAAAGAAGGCCGGCCCATTGGGCGGGAGCAGCTATGAGGAGGAAGAGGAGGAGGAGGGCG
GTGGAGGAGGCGAACGTAAGGTGGGCGGCCCCCACCCCAAATATGACGAGGACGCCAAACGGCCCTACTT
CACTGTGGATGAGGCTGAGGCCCGTCAGGACGGCTATGGGGACCGGACTCTGGGCTACCAGTATGACCCT
GAACAGCTGGACTTGGCTGAGAACATGGTTTCTCAGAACGACGGGTCTTTCATTTCCAAGAAAGAGTGGT
ATGTGTAG

Translation (515 aa):
MARMGLAGAAGRWWGLALGLTAFFLPGTHTQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKA
SNGSKQNMAIYNPTMGVSVLPPYEKRVEFLRPSFIDGTIRLSGLELEDEGMYICEFATFPTGNRESQLNL
TVMAKPTNWIEGTRAVLRARKGQDDKVLVATCTSANGKPPSAVSWETRLKGEAEYQEIRNPNGTVTVISR
YRLVPSREAHRQSLACIVNYHLDRFRESLTLNVQYEPEVTIEGFDGNWYLQRTDVKLTCKADANPPATEY
HWTTLNGSLPKGVEAQNRTLFFRGPITYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPTPEHGRRAGQ
MPTAIIGGVAGSVLLVLIVVGGIIVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPDD
SDDEKKAGPLGGSSYEEEEEEEGGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGYGDRTLGYQYDP
EQLDLAENMVSQNDGSFISKKEWYV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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