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Report for CCDS36675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36675.1 Public Mus musculus 13 F12 23 108 98 CCDS HistoryNCBI Gene:58992Re-query CCDS DB by CCDS ID:36675.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021948.14 ENSMUSP00000021948.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021948.14Link to Ensembl Protein Viewer:ENSMUSP00000021948.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021948Re-query CCDS DB by Protein ID:ENSMUSP00000021948
Original member Current member NCBI NM_021489.3 NP_067464.2 Accepted alive Link to Nucleotide Sequence:NM_021489.3Link to Protein Sequence:NP_067464.2Re-query CCDS DB by Nucleotide ID:NM_021489Re-query CCDS DB by Protein ID:NP_067464Link to BLAST:NP_067464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067464.2 597 Q80YC5 597 100% 0 0

Chromosomal Locations for CCDS 36675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55418099 55418266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55418352 55418500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55420117 55420260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55420347 55420483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55420649 55420871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55420975 55421147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55421243 55421408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55421525 55421629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55421753 55421884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55421967 55422077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55422406 55422476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55422673 55422772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55426303 55426360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55426712 55426768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGACGGCTCTGTTGTTCCTGGGGTCTCTGCTGATGAGTCTGGATCTGACACTTTCGGCTCCACCATGGA
AA
GACTCCAAGAAATTTAAGGACGCACCTGATGGGCCCACAGTGGTTCTCACTGTGGATGGGAGGCTCTG
C
CATTTTCCCTTTCAGTACCACCGTCAGCTACACCACAAATGCATCCACAAAAGGCGGCCAGGCTCCCGC
CCC
TGGTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAG
TG
AAAGACCATTGCAGCAAACACAACCCGTGCCACAAAGGAGGGACATGTATCAACACCCCCAATGGGCC
A
CACTGTCTCTGCCCTGAACACCTCACTGGGAAACATTGCCAGAAAGAGAAATGCTTTGAGCCTCAGCTT
CTC
AAGTTCTTCCACGAGAATGAGCTATGGTTTAGAACGGGGCCAGGAGGTGTGGCCAGGTGCGAGTGCA
AA
GGTTCTGAGGCTCACTGCAAGCCGGTGGCCAGCCAGGCCTGCAGCATCAATCCGTGCCTTAATGGGGG
C
AGCTGCCTCCTCGTGGAGGACCACCCACTGTGCCGTTGCCCTACAGGCTACACTGGATATTTTTGCGAC
TTG
GACCTTTGGGCGACCTGCTATGAAGGCAGGGGGCTCAGCTACCGGGGCCAGGCTGGAACTACGCAAT
CG
GGTGCGCCATGTCAGCGGTGGACCGTGGAGGCCACCTACCGGAACATGACTGAGAAGCAAGCGCTAAG
C
TGGGGCCTGGGCCACCACGCATTTTGCCGGAACCCAGATAATGACACACGTCCATGGTGCTTCGTCTGG
AGT
GGCGACAGGCTGAGCTGGGACTATTGCGGCCTGGAGCAGTGCCAGACGCCAACGTTTGCACCTCTAG
TT
GTCCCTGAGAGTCAGGAGGAGTCCCCGTCCCAGGCACCATCTCTGTCCCATGCACCAAATGACTCGAC
C
GATCATCAGACTTCTCTGTCCAAGACCAACACGATGGGCTGCGGACAGAGGTTCCGCAAGGGACTGTCC
TCG
TTCATGCGCGTGGTGGGCGGACTAGTGGCTCTGCCTGGGTCGCACCCCTACATCGCTGCACTGTACT
GG
GGTAACAACTTCTGCGCGGGCAGTCTCATCGCCCCCTGTTGGGTGCTGACCGCGGCTCACTGCCTGCA
G
AATCGGCCAGCGCCCGAGGAACTGACAGTGGTACTTGGTCAAGATCGCCACAACCAGAGCTGCGAGTGG
TGC
CAGACTCTGGCTGTGCGCTCCTACCGCCTTCACGAGGGCTTCTCCTCCATCACCTACCAGCACGACT
TG
GCTCTGCTGCGCCTGCAGGAAAGCAAAACCAACAGTTGCGCGATCCTGTCACCTCACGTTCAGCCTGT
G
TGTCTACCCAGCGGCGCGGCCCCACCCTCTGAGACAGTGCTCTGCGAGGTGGCCGGCTGGGGTCACCAG
TTC
GAGGGGGCTGAAGAATACTCCACCTTCCTGCAGGAGGCACAGGTTCCCTTTATCGCCCTGGATCGCT
GC
TCCAACTCTAACGTGCACGGAGACGCCATTCTCCCTGGGATGCTTTGCGCTGGCTTCTTGGAGGGAGG
C
ACCGATGCCTGCCAGGGTGACTCCGGGGGCCCTCTGGTGTGTGAGGAAGGAACTGCAGAACATCAGCTC
ACC
CTGCGCGGAGTCATCAGCTGGGGCTCCGGCTGTGGTGACCGCAACAAGCCCGGAGTCTACACAGACG
TG
GCCAACTACCTGGCTTGGATCCAGAAGCATATTGCTTCATAA


Translation (597 aa):
MTALLFLGSLLMSLDLTLSAPPWKDSKKFKDAPDGPTVVLTVDGRLCHFPFQYHRQLHHKCIHKRRPGSR
P
WCATTPNFDEDQQWGYCLEPKKVKDHCSKHNPCHKGGTCINTPNGPHCLCPEHLTGKHCQKEKCFEPQL
L
KFFHENELWFRTGPGGVARCECKGSEAHCKPVASQ
ACSINPCLNGGSCLLVEDHPLCRCPTGYTGYFCD
L
DLWATCYEGRGLSYRGQAGTTQSGAPCQRWTVEATYRNMTEKQALSWGLGHHAFCRNPDNDTRPWCFVW
S
GDRLSWDYCGLEQCQTPTFAPLVVPESQEESPSQAPSLSHAPN
DSTDHQTSLSKTNTMGCGQRFRKGLS
S
FMRVVGGLVALPGSHPYIAALYWGNNFCAGSLIAPCWVLTAAHCLQN
RPAPEELTVVLGQDRHNQSCEW
C
QTLAVRSYRLHEGFSSITYQHDL
ALLRLQESKTNSCAILSPHVQPVCLPSGAAPPSETVLCEVAGWGHQ
F
E
GAEEYSTFLQEAQVPFIALDRCSNSNVHGDAILPGMLCAGFLEGGTDACQGDSGGPLVCEEGTAEHQL
T
LRGVISWGSGCGDRNKPGVYTDVANYLAWIQKHIAS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser