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Report for CCDS29731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29731.1 Public Mus musculus 19 Rcl1 23 108 98 CCDS HistoryNCBI Gene:59028Re-query CCDS DB by CCDS ID:29731.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064393.5 ENSMUSP00000067579.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064393.5Link to Ensembl Protein Viewer:ENSMUSP00000067579.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064393Re-query CCDS DB by Protein ID:ENSMUSP00000067579
Original member Current member NCBI NM_021525.2 NP_067500.1 Accepted alive Link to Nucleotide Sequence:NM_021525.2Link to Protein Sequence:NP_067500.1Re-query CCDS DB by Nucleotide ID:NM_021525Re-query CCDS DB by Protein ID:NP_067500Link to BLAST:NP_067500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067500.1 373 Q9JJT0 373 100% 0 0

Chromosomal Locations for CCDS 29731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29101505 29101640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29115723 29115794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29118225 29118400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29121270 29121344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29121766 29121890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29127999 29128124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29130650 29130806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29134400 29134503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29143142 29143292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGCGACCCAGGCGCACTCACTCAGCTACGCGGGGTGTAACTTCTTGCGCCAGCGGCTGGTCCTGTCCA
CCCTGAGCGGGCGACCGGTCAAGATCCGCAGGATTCGCGCCAGGGACGACAACCCGGGCCTCCGAGATTT
TGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAGGA
ACAACCTTATACTACCAGCCTGGCCTCCTGTATGGCGGGTCTGTGGAGCACGACTGCAGTGTCCTCCGTG
GCATTGGCTATTACCTGGAAGCTCTGCTTTGCCTGGCTCCGTTTATGAAACACCCATTAAAAATCGTTCT
GCGAGGAGTGACCAATGACCAGGTTGACCCTTCGGTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTG
AAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAGATCTTGCGTCGGGGAATGCCCCCTGGAGGAG
GGGGCGAAGTGCTTTTCTCCTGCCCCGTGAGGAAGGTCCTGAAGCCTGTCCAGCTCACAGACCCAGGAAA
AATCAAGCGGATCAGAGGAATGGCGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGAT
TCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCA
GTTCTGGGAAGTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGC
GGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCA
AAGCTGCTACTTGAAGAGATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGTCTAGTTCTGCTGC
TCATGACCCTTGGACAGCAGGACGTTTCCAAAGTCCTGCTGGGACCACTCTCACCCTACACGATAGAATT
TTTGCGGCATCTGAAGAGCTTTTTCCAGGTTATGTTTAAAGTTGAAACCAAGCCATGTGGTGAAGAACTG
AAGGGCGGGGACAAAGTGCTAATGACCTGCGTTGGTATTGGCTTCTCTAACCTGAGCAAGACCCTCAAGT
GA

Translation (373 aa):
MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTG
TTLYYQPGLLYGGSVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLL
KQFGIDGESFELKILRRGMPPGGGGEVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYSVRVSPQMANRIVD
SARSILNKFIPDIYIYTDHMKGVSSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAVLPEDLGRNCA
KLLLEEIYRGGCVDSTNQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQVMFKVETKPCGEEL
KGGDKVLMTCVGIGFSNLSKTLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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